PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007708.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 34005.5 Da PI: 5.4348 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.1 | 4.2e-15 | 148 | 194 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Do007708.1 148 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 194 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.917 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 148 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-18 | 148 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.0E-15 | 149 | 198 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-17 | 149 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-15 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEDYSGLFMQ WAMDTLQQEH LAAAPVDDGS AEEATFPSLQ ALREASQAEE MVQELIGQPH 60 AANSWSSGDG DTADGSSVGN NADPALSRSG ISTTRPASWN FGAASAPPGR DVLSGVATAR 120 SLPELVYGSP PTRRAALLKS VGSMYAQDHI IAERKRREKI NQRFIELSTV IPGLKKMDKA 180 TILSDATRYV KELQEKIKAL EDGSNDRSIE SWVLVKKPCI VVPDEDSSPS WTSSGTPATL 240 RKPLPEIEAR FLEKRVMVRI HCEDGKGVAM RVLTEVEELH LSIIHANVMP FLATTLIITI 300 TAKASSFHFT FT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 157 | ERKRRE |
2 | 153 | 158 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007708.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365995 | 7e-47 | AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684457.1 | 1e-175 | transcription factor bHLH25 | ||||
TrEMBL | A0A1E5V743 | 0.0 | A0A1E5V743_9POAL; Transcription factor bHLH25 | ||||
STRING | Si011972m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-42 | bHLH family protein |