PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007699.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 272aa    MW: 29655.1 Da    PI: 5.0019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007699.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.71e-4461401128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                 lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+Pw+Lp+        ++ee+ w++F++r++++a+g r++r+t sgyWka g+   v+
  Do007699.1   6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPWQLPEihemlcGGAGEEEPWFYFCQRQEREARGGRPSRTTPSGYWKAAGTPGVVY 104
                 79****************************99***************9646665422336779************************************ PP

         NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 s+ +++++g+kkt+vfy+grap+g+kt+W m+eyr+
  Do007699.1 105 SSaDRRAIGMKKTMVFYRGRAPSGTKTKWKMNEYRA 140
                 9978889***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-493150IPR003441NAC domain
PROSITE profilePS5100547.9366189IPR003441NAC domain
PfamPF023654.7E-247139IPR003441NAC domain
SuperFamilySSF1019414.97E-49177186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPW QLPEIHEMLC  60
GGAGEEEPWF YFCQRQEREA RGGRPSRTTP SGYWKAAGTP GVVYSSADRR AIGMKKTMVF  120
YRGRAPSGTK TKWKMNEYRA LQYYDAASLA AAGPTTDGSS SSTAHTAAAP PNVPPQLRSE  180
FSLCRLYTKS GTLRQFDRRP LPAAAAGGVP GKDPAGPSTA GAAASPLDDD DGSGSSMQQQ  240
QPQQLMERGA DDPYGDDVAI LDALLYWPGD WA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-31114212144NO APICAL MERISTEM PROTEIN
1ut4_B1e-31114212144NO APICAL MERISTEM PROTEIN
1ut7_A1e-31114212144NO APICAL MERISTEM PROTEIN
1ut7_B1e-31114212144NO APICAL MERISTEM PROTEIN
4dul_A1e-31114212144NAC domain-containing protein 19
4dul_B1e-31114212144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-145AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818071.11e-150NAC domain-containing protein 90-like
TrEMBLA0A1E5URX20.0A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRINGSi002586m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-63NAC domain containing protein 90