PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 34017.5 Da PI: 6.4027 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.7e-13 | 83 | 134 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + + + a+++ A++++k+L+ Do007623.1 83 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASVVSGAIDFVKELE 134 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.04E-14 | 81 | 138 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-17 | 81 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.193 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-14 | 83 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 88 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MTLEALCAPS SDILVYDTFN AAAACAASAG SFVFGNAPAV EPSLPPPAQA PRTEGENMAQ 60 QQGRRKRRRR QRSVKNPVDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP ESYVHRSDQA 120 SVVSGAIDFV KELEQQLQSM EAQKLALQQQ QQRSNTAAAE RDAAQAPLRD PAPATEDAAA 180 REAAEGPPFA RFFRYPQYAW RHAPPPREDA AAAAAVGAED ASRVSAVADV EVGVMVDAHA 240 SLRVLAPRRP GQPLKMVAGM QALGLAVLHL NVTAAPGDLA LYTLSLKVEE GCCLATAEDI 300 AAAAHHVLCI IDAEAAAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 70 | GRRKRRRRQ |
2 | 63 | 69 | RRKRRRR |
3 | 64 | 68 | RKRRR |
4 | 64 | 71 | RKRRRRQR |
5 | 83 | 94 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007623.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727845 | 1e-116 | KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319605.1 | 1e-134 | transcription factor bHLH96-like | ||||
TrEMBL | A0A1E5VI53 | 0.0 | A0A1E5VI53_9POAL; Uncharacterized protein | ||||
STRING | Si010485m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-48 | bHLH family protein |