PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007568.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 272aa    MW: 30244 Da    PI: 6.0275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007568.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1269161155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C........................................TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.as.....................................kapskKlsKaeiLekAveYIksLq 55 
                 r+ +hn+ Er RR+++N+ ++ Lr+llP  +                                      +a +kKls  +++ ++ +YI +Lq
  Do007568.1  69 RKLSHNAYERDRRKQLNELYSSLRSLLPDaDHtvinsdnpntcrrplscmqinqeheiltmmcysvvldRAVQKKLSIPTTVSRVLKYIPELQ 161
                 6889*************************555**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-136796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.92268160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-56898No hitNo description
PfamPF000106.0E-1069161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-116998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-674166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13138176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-11140176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDHQLFDDPF ASSISSLEAD IFSAGGQLPS PPWPDLDLDD DDIHDLSAPA ANGTSSGGYG  60
SGGGSGSHRK LSHNAYERDR RKQLNELYSS LRSLLPDADH TVINSDNPNT CRRPLSCMQI  120
NQEHEILTMM CYSVVLDRAV QKKLSIPTTV SRVLKYIPEL QKQVDNLERR RKELTNANCK  180
PGVLNTSEII APVVSATCLT DMEIMVQVSL QSNVASTTLP LSKCIKVLEN EGLHLISSST  240
YATIDNRTFY SLHLQVHDYF SRFLAQKNFS TW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280051e-108KJ728005.1 Zea mays clone pUT6138 bHLH transcription factor (bHLH126) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971295.11e-118transcription factor ORG3
SwissprotA2WZ606e-88IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A1E5WJY50.0A0A1E5WJY5_9POAL; Uncharacterized protein
STRINGSi002720m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-23bHLH family protein