PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007557.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 382aa    MW: 42141.7 Da    PI: 9.2731
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007557.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28210263155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Do007557.1 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 263
                 79*******************.********************************8 PP
2Response_reg80.74.8e-27281361109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l + +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga 
    Do007557.1  28 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGAC 122
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l++
    Do007557.1 123 DYLLKPVRIEQLRT 136
                   ************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1711382IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.6E-4325167No hitNo description
SuperFamilySSF521722.56E-3525148IPR011006CheY-like superfamily
SMARTSM004485.0E-3226138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.15927142IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2428137IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.64E-2829141No hitNo description
PROSITE profilePS5129411.106207266IPR017930Myb domain
SuperFamilySSF466894.48E-20208267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-30208268IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-25210263IPR006447Myb domain, plants
PfamPF002491.1E-6212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTVEEVKLQA KANGGHGAKD QFPVGMRVLA VDDDPTCLKV LENLLLRCQY HVTTTGQAAT  60
ALKLLREKKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGET QTVMKGITHG  120
ACDYLLKPVR IEQLRTIWQH VVRRKSSDAK NQGNDNDDSG KKLQLVSAEG DNGGVNRNKR  180
TSRKGRDDNG DNGDDSDDSN ENGDSSGQKK PRVVWSVELH RKFVAAVNQL GIDKAVPKKI  240
LDLMNVENIT RENVASHLQK YRLYLKRLSA DASRQANLTA AFGGRNPAYV NMGLEAFRHY  300
NAYGRYRPVP TTNHSQSNNL LARMNSPSGF GMHGLLPSQP LQIGHTQNNL STSFVNVGGM  360
NNGNLIRGAH MPLQDSSKCF PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25206269164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587450.0HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds.
GenBankHQ8587600.0HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotA2X1N20.0ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A1E5VNB30.0A0A1E5VNB3_9POAL; Two-component response regulator ORR24 (Fragment)
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-113response regulator 12