PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GeBP | ||||||||
Protein Properties | Length: 239aa MW: 25962 Da PI: 6.4005 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 37.3 | 7.7e-12 | 4 | 53 | 48 | 97 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++ ql+eK+rrLK+Kf+ + +++ g +p+ ++hd+++++l++++W+ Do007514.1 4 PYTRAQLSEKLRRLKNKFRSVSVRVAGGLDPARLAPHDRDVLHLCSRLWD 53 57899********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.1E-10 | 4 | 53 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPQPYTRAQL SEKLRRLKNK FRSVSVRVAG GLDPARLAPH DRDVLHLCSR LWDPANAATS 60 PFAVSAGSSG NKRRRANPRG TQLPLPDASG DSNSHDYNGI ISSAPGLFPD GSNGEDMFYL 120 EQESGHLGDH QGAALVADSK FGVIVQEQPE TLAALPNGNN GIGNEMNGDQ KMVVPCSNEH 180 RMANAVLDVF EECLREAKAN GSAEESELAK RWRVQRMDEL DVLSRRLRLL VEDAAAAGH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464013.1 | 1e-148 | probable transcription factor At3g04930 | ||||
Refseq | XP_021307245.1 | 1e-148 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A1E5W5V2 | 1e-175 | A0A1E5W5V2_9POAL; Uncharacterized protein | ||||
STRING | Sb01g010570.1 | 1e-147 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |