PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do007494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 611aa MW: 64774.7 Da PI: 6.334 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 384.5 | 1.3e-117 | 216 | 585 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 v +L++cA+ ++++++ +a+ +Larl e+asp g +pm+R+aayf+eALa r++r+++++++ pp+e ++ ++ ++al++++ ++Pi++f h+t Do007494.1 216 VVALTACADSLAARNHDAANYYLARLGEMASPVGpTPMHRVAAYFAEALALRVVRTWPNVFDVTPPRELTDGAvGDDDATALRILNAITPIPRFLHFTL 314 5689****************************************************************9988878999********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+ s++el+etg rL ++A++lg+ fef++ v++rled++l++L+vk Do007494.1 315 NERMLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLATRAIPPAHVRITGVGE----SRQELQETGARLGRVAAALGLAFEFHA-VVDRLEDVRLWMLHVK 408 ***************************************************....9**************************.7*************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreiv 295 +gE++aVn+vl+ hrll++++ + +++L l +s+ + ++ + e+e +ns+ + +rf++al+yy+a fd++ +a+l+++s +r+k E++ ++rei+ Do007494.1 409 RGECVAVNCVLAAHRLLRDDTGAAL--TDFLGLARSTGAAILLLGEHEDALNSGLWEARFARALRYYAAAFDAVdAAGLASASPARVKAEEM-FAREIR 504 *****************88777766..99*********************************************9999**************.****** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 n+va e a+r+erhe++ W++r+ee GF+++ +++++a+q +++ r+++ y+v+ + + l+l W+d+p+++vSaW+ Do007494.1 505 NAVAFEAADRFERHESFVGWQRRMEEGGFQNAGIGDREAMQGRMIARMFAPGNYTVQTQgdGEGLTLRWMDQPMYTVSAWT 585 **************************************************555***9654367788**************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.779 | 189 | 563 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-115 | 216 | 585 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 611 aa Download sequence Send to blast |
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR GNRGDGGAAP RVAAGDAATC SFRAHPAPPV 60 TQAVSWGAKP EPGGNGAGGV WERSRAVKRA HDEGAGDEYG GGPVVRAKRT KMGGDGDEVW 120 FHPSIAGTMQ AAGAGDGEEP EEEKVFLVPS AAAFPHAGPS LATAKKEELS KSPSNSPASS 180 AGTDGGSSAV PPPLELHARN GVPAQGEAGR EAMELVVALT ACADSLAARN HDAANYYLAR 240 LGEMASPVGP TPMHRVAAYF AEALALRVVR TWPNVFDVTP PRELTDGAVG DDDATALRIL 300 NAITPIPRFL HFTLNERMLR AFDGHDRVHV IDFDIKQGLQ WPGLLQSLAT RAIPPAHVRI 360 TGVGESRQEL QETGARLGRV AAALGLAFEF HAVVDRLEDV RLWMLHVKRG ECVAVNCVLA 420 AHRLLRDDTG AALTDFLGLA RSTGAAILLL GEHEDALNSG LWEARFARAL RYYAAAFDAV 480 DAAGLASASP ARVKAEEMFA REIRNAVAFE AADRFERHES FVGWQRRMEE GGFQNAGIGD 540 REAMQGRMIA RMFAPGNYTV QTQGDGEGLT LRWMDQPMYT VSAWTPVGDG GGGGSTVSAS 600 VSTTASHSQQ S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-61 | 222 | 586 | 25 | 379 | Protein SCARECROW |
5b3h_D | 8e-61 | 222 | 586 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do007494.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP001168 | 0.0 | AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02. | |||
GenBank | AP002838 | 0.0 | AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812393.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A1E5WNH3 | 0.0 | A0A1E5WNH3_9POAL; Scarecrow-like protein 28 | ||||
STRING | Si008220m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-118 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|