PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007366.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 437aa    MW: 47361.8 Da    PI: 5.8476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007366.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-175397147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
       Do007366.1 53 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 97
                     789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.58E-1647101IPR009057Homeodomain-like
PROSITE profilePS5129422.05648102IPR017930Myb domain
TIGRFAMsTIGR015577.0E-1651100IPR006447Myb domain, plants
SMARTSM007171.6E-1452100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-105393IPR009057Homeodomain-like
PfamPF002491.2E-145396IPR001005SANT/Myb domain
CDDcd001671.17E-115598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MASMAQVEER DGLDSSGLPI EKMQPVDDAM QSKEGMDGYP VKARKPYTIT KQREKWTEEE  60
HEKFLEALKL YGRSWRQIQE HIGTKTAVQI RSHAQKFFSK VVREPGASNA IEIPPPRPKR  120
KPLHPYPRKC ADSSTVANPG MGQPKLASHS SSSGSDQENS SPVSVLSAMQ SDAFGSSVSN  180
PSMGCMSPAS SDDGNNAPAL VNGEGNLLAQ QIEDDQSRQG QDMFQFQEIK QDNSDGDLSE  240
EDLSEGVQET SLKLFGKTVI IPDPKKICSS DGGCGDGEKS SESSKQEVLQ ASSIGGIAAY  300
PAHNGWLLPY HSFPFHMGEA GDARISPLRV WWPYYGFPVG HPRGFGTGLH TEGTCESDTG  360
KSPAVESSSD CVGNVQTMAP TNCKVVKESL EAIQVAESAL SFELKPSLNS AFVRVKPSSS  420
RGQSVRGFVP YKRCKVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0240491e-166FJ024049.1 Zea mays MYB-like protein E1 (MYBE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A1E5WE160.0A0A1E5WE16_9POAL; Protein REVEILLE 2
STRINGSi006457m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-37MYB_related family protein