PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007342.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 546aa    MW: 56592.5 Da    PI: 9.7795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007342.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027261283223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ Cg++F  ++ L+ H  + H
  Do007342.1 261 SCHRCGEHFGKWEALEAHHLSkH 283
                 7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.829260285IPR007087Zinc finger, C2H2
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
SuperFamilySSF563994.03E-23324545No hitNo description
Gene3DG3DSA:3.90.228.106.3E-12349522IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGERRRRWGG GATTAAAAPG GGGGGGSART EEEKAAAAAA ATGKAPPPTV WFALKRSLHC  60
RSEPSEVHVP RAKAGGPAAV AGGAVGGGHL SSIVTKRAAP RSGCSRSIAN LRDVIHGSKR  120
HPGQPPSCSP RSIGSSEFLN PIAHEVVLST NSRCELKITG FGGCGGLGAV GLGAAAQDAD  180
GGADCVTSSF VGTLRPGTPG PAWAGHGLPY SGSMRGGASV RCTPPRSPNV LLERSGSVAA  240
AGHRASCEEA AKNNKGSGGL SCHRCGEHFG KWEALEAHHL SKHAGLVLLF VQLQLQKQLG  300
TYVHHHQGKK AADPGRCSFC MLMCAVTELV EGDSSRKIVE IICRTSLLKS ESSCVRIERV  360
FKVHNTQRTL SRFEEYREAV KLKASKLPKK HPRCLADGNE LLRFHGATLS CALGSGGPGG  420
SSSSSLCASD KCAVCRIIRH GFSARKEGKA GVGVFTTSTS GRAFESIEAA GDDGGGDPAG  480
TTRKALLVCR VIAGRVHKPL ENLREFAGQT GFDSLAGKVG PYSNIEELYL LNPRALLPCF  540
VVICKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERRRRW
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2521250.0FM252125.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-1 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818591.10.0uncharacterized protein LOC112894954
TrEMBLA0A1E5WM850.0A0A1E5WM85_9POAL; Uncharacterized protein
STRINGPavir.Eb03434.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-133C2H2 family protein