PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007302.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 710aa    MW: 75826.9 Da    PI: 6.6471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007302.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12532577454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Do007302.1 532 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 577
                 799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-5365245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39528577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18531599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-14531581No hitNo description
PfamPF000104.7E-10532577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18532599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16534583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAD LPAFAWGAPA GGGGGGASSA AATPPLPQQQ QMPPAMAQGF  60
SQDTLQQRLQ AMIEGSRETW TYAIFWQSSV DAATGASLLG WGDGYYKGCD DDKRKQRPLT  120
PAAQAEQEHR KRVLRELNSL ISGAAAAPDE AVEEEVTDTE WFFLVSMTQS FLNGLGLPGQ  180
ALFAGQPTWI ASGLSSAPCE RARQAYVYGL RTMVCVPVGT GVLELGSTDV VFQTAESMAK  240
IRSLFGGGGG GGSWPPVQPQ PPQQQPAAGA DQAETDPSVL WLADAPVMDI KDSLSHPSAE  300
ISVTKPPPPP PQIHFENGST STLTENPSPS LHAPPPPPAP AAAPPQRQHQ HNQAHQGPFR  360
RELNFSEFAS NPSMAAAAPP FFKPESGEIL SFGADSNSRR NPSPAPPAAT ASLTTAPGSL  420
FSQHTATLTV AAANDAKNNN KRSMEATSRA SNTNHHPAAT ANEGMLSFSS APTTRPSTGT  480
GAPAKSESDH SDLDASVREV ESSRVVAPPP EAEKRPRKRG RKPANGREEP LNHVEAERQR  540
REKLNQRFYA LRAVVPNVSK MDKASLLGDA ISYINELRGK LTALESDKDT LHAQIEALKK  600
ERDARPAPHA AGLGGHDAGP RCHAVEIDAK ILGLEAMIRV QCHKRNHPSA RLMTALRELD  660
LDVYHASVSV VKDLMIQQVA VKMASRVYSQ EQLNAALYTR LAEPGTTMGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-63602454192Transcription factor MYC3
4rqw_B1e-63602454192Transcription factor MYC3
4rru_A2e-636024143227Transcription factor MYC3
4rs9_A1e-63602454192Transcription factor MYC3
4ywc_A2e-636024143227Transcription factor MYC3
4ywc_B2e-636024143227Transcription factor MYC3
4yz6_A1e-63602454192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513521KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0611070.0AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335485.10.0myc transcription factor 7
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A1E5W7330.0A0A1E5W733_9POAL; Transcription factor MYC2
STRINGGRMZM2G001930_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-64bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]