PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do007212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 32152.9 Da PI: 9.6262 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 9.7e-06 | 211 | 251 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P +++ a++L +A Y+k L Do007212.1 211 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 251 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.215 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.39E-10 | 208 | 256 | No hit | No description |
SMART | SM00353 | 6.8E-11 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-12 | 208 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 211 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MGLDTADVLP SVGGAVEDSL LDPFVYVPNV VAVAEEPAQT TAPSNTDFSG YSSTTGGGNG 60 NISSGESITC GGGGGGYDTE VASPCAVSRP ALLQTTTGVP PSKRKPGKYP AIAAPGRKAA 120 AGRRGEKRTA ATSPSSTSIT FAGQGHDDHA AGGGYEPDSE AIAQVKEMIY RAAAMRPVHQ 180 LVCGAAEPPS SQAKPRRKNV RISSDPQTVA ARLRRERVSE RLRVLQRLVP GGSRMDTASM 240 LDEAASYLKF LKSQLKALER ASPSNGSYHN GSLLQSYTGS LGGGGAAGAS TVLAFGRDSA 300 IGGYVKSNRN VQL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 193 | 198 | KPRRKN |
2 | 211 | 216 | RLRRER |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do007212.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065889 | 1e-122 | BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds. | |||
GenBank | BT066302 | 1e-122 | BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961359.1 | 1e-157 | transcription factor BHLH089 | ||||
Swissprot | A0A0P0WQ90 | 1e-76 | LF_ORYSJ; Transcription factor LATE FLOWERING | ||||
TrEMBL | A0A1E5W6W2 | 0.0 | A0A1E5W6W2_9POAL; Uncharacterized protein | ||||
STRING | Si022274m | 1e-156 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 4e-28 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|