PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007136.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 295aa    MW: 30768.6 Da    PI: 7.9921
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007136.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.92.7e-32371521104
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg 88 
                 aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+i WL+++a +ai+ l+++           ss++a  + +++++s++++s+s+
  Do007136.1  37 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIAWLIRAAGAAIDGLPSLdcsfalpvgaaSSPPA--AGDDAEVSTSETSKSS 133
                 6899*************************************************************9999998876533333..2222222222222222 PP

         TCP  89 ..........kaaksaakskksqksa 104
                           +aa++a       ++a
  Do007136.1 134 vlslsnapadNAATAA-------HQA 152
                 3333222222111111.......111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3039150IPR005333Transcription factor, TCP
PROSITE profilePS5136930.234098IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEEVGMERTA CKRPRAALEG GSAAAAAWRT CRVARAAAGG KDRHSKVVTA RGLRDRRVRL  60
SVPTAIQFYD IQDRLGVDQP SKAIAWLIRA AGAAIDGLPS LDCSFALPVG AASSPPAAGD  120
DAEVSTSETS KSSVLSLSNA PADNAATAAH QANHAYNGNA SGGAAFPELL HCSASDSKPM  180
QQQPTLAYYA AQLPSSHAAP AMPFETMPQL AFIQEQPHTA VGFDRGTLQS NAAVAAPLWP  240
PSQQAFLLQR FATAPADANG LPFFLGGSAA AAAAPLTVNA EPRLQLWDFK QERKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-224599155Putative transcription factor PCF6
5zkt_B9e-224599155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.11e-165transcription factor PCF8
SwissprotA2ZMR93e-95PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A1E5WN180.0A0A1E5WN18_9POAL; Transcription factor PCF8
STRINGPavir.Ca02949.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-21plastid transcription factor 1