PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007015.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 398aa    MW: 42312.6 Da    PI: 6.8722
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007015.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.9e-3588201189
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssasnsssg...... 88 
                 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak ai+el++    ++ +e+    e+++++ s+s    g      
  Do007015.1  88 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKSAIDELPDRAEAPSaTEAadaaEPAEQVTSTS---YGfgnpgg 183
                 689*************************************************************944333122232223333333333...11333444 PP

         TCP  89 .................k 89 
                                  +
  Do007015.1 184 aisgmaggsfvphsvgaD 201
                 555555555555555551 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3190207IPR005333Transcription factor, TCP
PROSITE profilePS5136932.90991149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYMAIACSCS QGLFSTLHYL LQEKERAQAQ EQLQIYHQQG FSYLQHHRRQ QQQQPRAGAG  60
GDGVSSGEST PVDALATAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY  120
DVQDRLGYDR PSKAVDWLIR NAKSAIDELP DRAEAPSATE AADAAEPAEQ VTSTSYGFGN  180
PGGAISGMAG GSFVPHSVGA DGVPGNVKSL FPSSSTASTT PAHDEYRGSP PDLLSRTTSS  240
QPQELCLTLQ SNQHQIFSHV SHQNHQGMIS GAGVPGWPEH GQRMPPWHAS EGSAGDGRGA  300
GNGDGYMFGV QQRQGLDHQQ SQLFSQGEPL QSSGGWASSA RTWLDPLAAI HQPSAMAGQV  360
GFSHLVGAGG GFMGFLAPAA AAQRLQGEEE QGSEAMRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2096150155Putative transcription factor PCF6
5zkt_B1e-2096150155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721190.0EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-151PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A1E5V1L90.0A0A1E5V1L9_9POAL; Transcription factor PCF7
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-38TCP family protein