PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 365aa MW: 38813.5 Da PI: 7.6363 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.5e-05 | 232 | 269 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYI+ L Do006971.1 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 269 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.036 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.94E-6 | 230 | 274 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-10 | 230 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-8 | 234 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MADEWWSSAA RTDDGASACS TVRATTDQDA AESAATSATS TDYFRPSLHG DAAASSTSFL 60 ADPPHMDWTH AYMGGRAAAA EATTGFNALL QLHGDAGRRF LLDQPGVVDG AALVAPAAAS 120 QGASLYAGNQ YSSYGDAVPA APMTKPFSQQ QFSGTFGSST RNFSGMPPSV PPMTTKPLLL 180 KALEHKAFKS HKEPVLDACS SATRRNVPDS PAAAAKKPRI ATPSPLPTFK VRKEKLGDRI 240 TALQQLVSPF GKTDTASVLH EAIEYIRFLH DQVAVIAQSV LLELMNRPLQ SLSSPYLRCG 300 RPVQVQQLQQ QQFSPSYQAK AGDGGEAKED LRSRGLCLVP VASTYAVASE TAPEFWHPTL 360 GGTFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006971.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069546 | 3e-68 | BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806482.1 | 1e-174 | transcription factor bHLH112-like isoform X2 | ||||
TrEMBL | A0A1E5WFC4 | 0.0 | A0A1E5WFC4_9POAL; Transcription factor bHLH112 | ||||
STRING | Si022548m | 1e-163 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 2e-45 | bHLH family protein |