PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006942.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 3171aa MW: 337551 Da PI: 7.4696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006942.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	710	752	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR+++ + f++L +llP + kK +Ka+++ +Av YIk L Do006942.1 710 TERERRKKMENMFSTLHTLLPRL----PKKADKATVVGEAVTYIKTL 752 6*******************7....399*************98 PP
2	HLH	36.9	6.3e-12	2335	2378	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f+ L llP++ +K +Ka+i+ kAv YIk L+ Do006942.1 2335 TERERRKKMKDMFSALHALLPQL----PEKTDKATIVGKAVTYIKTLE 2378 7*******************6....39**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	1.43E-8	62	128	No hit	No description
PROSITE pattern	PS00972	0	67	82	IPR018200	Ubiquitin specific protease, conserved site
PROSITE profile	PS50888	13.256	702	752	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.26E-12	705	772	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.40E-9	707	753	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-12	707	769	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-7	710	758	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-7	710	752	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.081	2327	2377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-14	2331	2394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-12	2332	2382	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-14	2332	2389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-10	2335	2383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-9	2335	2378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd02116	0.00355	2507	2555	No hit	No description
Pfam	PF01201	6.6E-29	2697	2840	IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2
CDD	cd11382	7.12E-41	2758	2842	No hit	No description
TIGRFAMs	TIGR00307	5.2E-25	2758	2842	IPR001047	Ribosomal protein S8e

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006412	Biological Process	translation
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0005840	Cellular Component	ribosome
GO:0003735	Molecular Function	structural constituent of ribosome
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 3171 aa Download sequence Send to blast
MGKFMHDNPL VPHSEVNRHH YSLAAVAVGL GLGVAGLCKV LYSSLSMPWV SPRNLLLGSE 60 RVYYVGGLRN LGNNCFLNVI LQALASCDSF VSSLYGLLAT DGLLPEEKDE RMPLLLALSP 120 LLEDLSIVRD ERIVLNPDGL SLDFENFHCL PLSPVLNTNG DIVLHESSPS QLSPLTSFSP 180 LPCNHCAMSQ EGANLPHEVE RDHTTNANGS THAGAGSAIL RPTSSISGSI SKPANEIDND 240 WSKLASPPVL HAGEDNNIGS KISGPAVLHA GEDDNTGSTL TSPSALHAGE DKDNNAGSKL 300 TNPTVLYVGE DNKTGSKLAI QAMPDAGEDN NAGSKLTCPV ALHAGEDNNI GSKLDSPAML 360 HTSVDNNVGF KLDIPEALYV SENNNARSKL ISPVALHASE DKDNNTRSNL ASPVVLHASK 420 EINTGSKLAS PVALHAAGED KENKAESKLA GLVALHVGED KKEGSKLVIQ AVPHHGEDNN 480 VGSNSKVSSP VVLFAGEDNN AGSKINSPTV LHAGVDKNTT LVLYAIKNNN AKSKLAAIPT 540 VLHAGEDKDN NSGSNLGSQV VLHAGEDNKV GSNLAVQPVP HVGEDPSAES KLAYPGGKDN 600 HTVSKLAIQA TLHACEDNNT SSKPTSLATV DAGENNTKEG KNSEEEGGGN VVAAGSGGGA 660 SSSTSKKSTV DGGSDHGAIK DAPAAIADGG RGKGKGAKAV KEDHVLHIWT ERERRKKMEN 720 MFSTLHTLLP RLPKKADKAT VVGEAVTYIK TLKGTVKKLE KLKQERMRAQ VEQLLVGAGS 780 SSAAAAPSSA RHPAPAPATR EAILADKVHD WNTQEAVMAE LKAAATAVIE AAGTSSAAPL 840 GTMVAAAAPA PVLAPAPGPP IQTWSTPNIV VCVAGNAAFI NLRTPRHPGM LTKLMYVLEK 900 HRINVMATTV SSDQSHSLLS IQARVSQTGL GSCAIFLISY INAATPAPPH FPEDLTIEDS 960 PTHPQTRSHQ PELKPLLSTW LPTTQPLLRS PSDASLCCVD REAPLTLPAT SAPDRMLLES 1020 QLSNETAPQG SGSLPVVEVF APNPTSPAPA ATSLDVVAAS SSGGASPEPP SPETVPTSLP 1080 SFAQALGKPL DPPVLPSPPL RRPRNRVVPS APPRRSHRLA KKAMGRTPAL MAAQNILMRK 1140 LGLSVGTQLQ TADFDRYIQI FKNGLTEEQT KMIREPFANS VTAPADLGVS KSEKFITMGI 1200 CIIKPIDAAV LLSIYRAISL NTKRISMVVP FYTNCNDGEA ETAKKCCCLS VNLLCANCKV 1260 YAFSCVLAAF AFMSSPSQLC SPLTSFSPLP CNHRAMSQEG ANLPHEVERS HDQATVPDGI 1320 TLAGVGLAIV RVDSSSSSSV SNLDSESNNT RSKIANLVVL HAGEDNKVES KLSSPVVLHE 1380 GMESNIGSKL ASPVVLHAIK DKDKKAKSRL ASSVVLHVGE DNKVGSNLTI QAIPHVVEER 1440 NTGSNSKPTC LVVLYAGEDN NVEPKINNPV LLHAGVDNNA AGVLYAGEDN NARSKLTSLG 1500 VVHSSEGKEN NIGSNLVGLV VLHVGKDNKV SEVNKVRSNL AIQSVPHTGE ETNAGSKLAS 1560 PAMLHGNEDN NAASKLIIQL VPHVAKDNNI GSETASSAVV DAGENKTKEG HDVEEEEGNT 1620 ILAAGSNGSA LSNTIKKLKK DDGSAHDAMK DAPSSVADGC RGKGKGKGST AVEVDSALHI 1680 WTKQEWIMKM NNMFNILHAL LPQLPKNVTE VNEATVVWEV LSYIKTLDPE VTVQWLEKLT 1740 QERMRLEAEQ LVVGAGSSSS AAPASSSARH PAPAPAPARA TREVILADMV HDWNAQEAIL 1800 AELKAAASAV VEAASWPNVE VHVAGNNAFI NLRTPRHPGI LTKLQYVLEK HRINVMASTV 1860 SSDQIHNFFS IEASIDAATP APSQIPENLT IKDRFCAFIC YVLRSVFMGH IYFPLLLNLF 1920 PFAGETAKKC CCWKTFLCAK CKVYALPCVL GAVAVYKSSP SLIFPLRSSS PLPCNHCAMS 1980 QEGTNLPHEV EQSHDHATTP DDSILAGVEP TIVRFIGSSS SSVSNLASET NNIGSKPGSP 2040 TVLHASEDNN AESMMTSSVV LHAGEDNNVG AKLTNQAAHH ADEDSNTGSK LACPVVLHAD 2100 EDKNYNIESK PSSSVLLHAG EGNKAESNLA VQVVPYVDKY NNIGSNSKLT CPAVLYAGED 2160 KNSRSKIESP VMLHAVMDNN TTLVVYAGET NNTESKIASP PILHADENKD NNVGYNIASP 2220 EELHASEDNR DGSNLAIQKV PHGGKDNNTR SKPTNLVAVD TGRKNAKEGK NAREEGGGGD 2280 TPSNANMKSI VDGHGAHDTI KNALAAVADG GGGKGRGRGK GKGAAEVDHA LHIWTERERR 2340 KKMKDMFSAL HALLPQLPEK TDKATIVGKA VTYIKTLEGN VQSLEKLKQE RICAQAEQLL 2400 LGADSSSAAA ASSSARHPAP APAPATREAI LANMVHDWNA QEAIMAELKA AASAVVEAAG 2460 SSSAAPRGTN VAVEAPVAAP ILALAPPLQT WSAPNIVVCV AGNDAFINLR TPRRPGMLTK 2520 VLSVLEKHRI NVMATTVSAD QSHSLFSIQT RINGTTPAPP QLPENLTIED RSEPPNYPSP 2580 MDPSPHQYHD SPAYTTHNDF QDALDQFKAQ IGRDFTFKAS WHALKNTRKW LDSQNSSTGT 2640 AAGENSAGTD EPLGSEPPRP IGRDAAKKHR SDGARTESSS AAAGFFERLA VSREGKREDE 2700 AARAAKSEAA MQRQLDLQDR ANNLVEKDIT LRCFAVHVVS CSVLCMYCLM LLRIMEIRYE 2760 LGRQPANTKL SSNKTVRRVR VRGGNVKWRA LRLDTGNYSW GSEAVTRKTR ILDVVYNASN 2820 NELVRTQTLV KSAIVQGQEG EAAAEETKKS NHVQRKLDKL EGKELEFYMK KLQRKKGKDF 2880 RIKGNVASGG TMITPPPSTE AHLPVTDRRS LRLSGSGSGS ICNLASETNN VGSKPTSLVV 2940 LHAGEDKDAR SNFASQATLY DDEDNNLGSK PASLVVLNAS EYKENNVGSK LTNAMVLHAS 3000 EDNKLWRRRR RRRSRRRRRR RRRRRGGIIL TAGSSCGNLS NTIKKGCNIP EASSGGGAPF 3060 NTSKKLTTDG DPSHDTIEDA PAAMVDVGKG KGRGKSKGTV AEEVDHWLHI WTKTERMKKM 3120 KNMFSTMHAL LPELPKKINA ATPAPPFLPK NMTNEDRYKL AVEEMLHVVA N

Sequence ? help Back to Top

Protein Sequence Length: 3171 aa Download sequence Send to blast

MGKFMHDNPL VPHSEVNRHH YSLAAVAVGL GLGVAGLCKV LYSSLSMPWV SPRNLLLGSE  60
RVYYVGGLRN LGNNCFLNVI LQALASCDSF VSSLYGLLAT DGLLPEEKDE RMPLLLALSP  120
LLEDLSIVRD ERIVLNPDGL SLDFENFHCL PLSPVLNTNG DIVLHESSPS QLSPLTSFSP  180
LPCNHCAMSQ EGANLPHEVE RDHTTNANGS THAGAGSAIL RPTSSISGSI SKPANEIDND  240
WSKLASPPVL HAGEDNNIGS KISGPAVLHA GEDDNTGSTL TSPSALHAGE DKDNNAGSKL  300
TNPTVLYVGE DNKTGSKLAI QAMPDAGEDN NAGSKLTCPV ALHAGEDNNI GSKLDSPAML  360
HTSVDNNVGF KLDIPEALYV SENNNARSKL ISPVALHASE DKDNNTRSNL ASPVVLHASK  420
EINTGSKLAS PVALHAAGED KENKAESKLA GLVALHVGED KKEGSKLVIQ AVPHHGEDNN  480
VGSNSKVSSP VVLFAGEDNN AGSKINSPTV LHAGVDKNTT LVLYAIKNNN AKSKLAAIPT  540
VLHAGEDKDN NSGSNLGSQV VLHAGEDNKV GSNLAVQPVP HVGEDPSAES KLAYPGGKDN  600
HTVSKLAIQA TLHACEDNNT SSKPTSLATV DAGENNTKEG KNSEEEGGGN VVAAGSGGGA  660
SSSTSKKSTV DGGSDHGAIK DAPAAIADGG RGKGKGAKAV KEDHVLHIWT ERERRKKMEN  720
MFSTLHTLLP RLPKKADKAT VVGEAVTYIK TLKGTVKKLE KLKQERMRAQ VEQLLVGAGS  780
SSAAAAPSSA RHPAPAPATR EAILADKVHD WNTQEAVMAE LKAAATAVIE AAGTSSAAPL  840
GTMVAAAAPA PVLAPAPGPP IQTWSTPNIV VCVAGNAAFI NLRTPRHPGM LTKLMYVLEK  900
HRINVMATTV SSDQSHSLLS IQARVSQTGL GSCAIFLISY INAATPAPPH FPEDLTIEDS  960
PTHPQTRSHQ PELKPLLSTW LPTTQPLLRS PSDASLCCVD REAPLTLPAT SAPDRMLLES  1020
QLSNETAPQG SGSLPVVEVF APNPTSPAPA ATSLDVVAAS SSGGASPEPP SPETVPTSLP  1080
SFAQALGKPL DPPVLPSPPL RRPRNRVVPS APPRRSHRLA KKAMGRTPAL MAAQNILMRK  1140
LGLSVGTQLQ TADFDRYIQI FKNGLTEEQT KMIREPFANS VTAPADLGVS KSEKFITMGI  1200
CIIKPIDAAV LLSIYRAISL NTKRISMVVP FYTNCNDGEA ETAKKCCCLS VNLLCANCKV  1260
YAFSCVLAAF AFMSSPSQLC SPLTSFSPLP CNHRAMSQEG ANLPHEVERS HDQATVPDGI  1320
TLAGVGLAIV RVDSSSSSSV SNLDSESNNT RSKIANLVVL HAGEDNKVES KLSSPVVLHE  1380
GMESNIGSKL ASPVVLHAIK DKDKKAKSRL ASSVVLHVGE DNKVGSNLTI QAIPHVVEER  1440
NTGSNSKPTC LVVLYAGEDN NVEPKINNPV LLHAGVDNNA AGVLYAGEDN NARSKLTSLG  1500
VVHSSEGKEN NIGSNLVGLV VLHVGKDNKV SEVNKVRSNL AIQSVPHTGE ETNAGSKLAS  1560
PAMLHGNEDN NAASKLIIQL VPHVAKDNNI GSETASSAVV DAGENKTKEG HDVEEEEGNT  1620
ILAAGSNGSA LSNTIKKLKK DDGSAHDAMK DAPSSVADGC RGKGKGKGST AVEVDSALHI  1680
WTKQEWIMKM NNMFNILHAL LPQLPKNVTE VNEATVVWEV LSYIKTLDPE VTVQWLEKLT  1740
QERMRLEAEQ LVVGAGSSSS AAPASSSARH PAPAPAPARA TREVILADMV HDWNAQEAIL  1800
AELKAAASAV VEAASWPNVE VHVAGNNAFI NLRTPRHPGI LTKLQYVLEK HRINVMASTV  1860
SSDQIHNFFS IEASIDAATP APSQIPENLT IKDRFCAFIC YVLRSVFMGH IYFPLLLNLF  1920
PFAGETAKKC CCWKTFLCAK CKVYALPCVL GAVAVYKSSP SLIFPLRSSS PLPCNHCAMS  1980
QEGTNLPHEV EQSHDHATTP DDSILAGVEP TIVRFIGSSS SSVSNLASET NNIGSKPGSP  2040
TVLHASEDNN AESMMTSSVV LHAGEDNNVG AKLTNQAAHH ADEDSNTGSK LACPVVLHAD  2100
EDKNYNIESK PSSSVLLHAG EGNKAESNLA VQVVPYVDKY NNIGSNSKLT CPAVLYAGED  2160
KNSRSKIESP VMLHAVMDNN TTLVVYAGET NNTESKIASP PILHADENKD NNVGYNIASP  2220
EELHASEDNR DGSNLAIQKV PHGGKDNNTR SKPTNLVAVD TGRKNAKEGK NAREEGGGGD  2280
TPSNANMKSI VDGHGAHDTI KNALAAVADG GGGKGRGRGK GKGAAEVDHA LHIWTERERR  2340
KKMKDMFSAL HALLPQLPEK TDKATIVGKA VTYIKTLEGN VQSLEKLKQE RICAQAEQLL  2400
LGADSSSAAA ASSSARHPAP APAPATREAI LANMVHDWNA QEAIMAELKA AASAVVEAAG  2460
SSSAAPRGTN VAVEAPVAAP ILALAPPLQT WSAPNIVVCV AGNDAFINLR TPRRPGMLTK  2520
VLSVLEKHRI NVMATTVSAD QSHSLFSIQT RINGTTPAPP QLPENLTIED RSEPPNYPSP  2580
MDPSPHQYHD SPAYTTHNDF QDALDQFKAQ IGRDFTFKAS WHALKNTRKW LDSQNSSTGT  2640
AAGENSAGTD EPLGSEPPRP IGRDAAKKHR SDGARTESSS AAAGFFERLA VSREGKREDE  2700
AARAAKSEAA MQRQLDLQDR ANNLVEKDIT LRCFAVHVVS CSVLCMYCLM LLRIMEIRYE  2760
LGRQPANTKL SSNKTVRRVR VRGGNVKWRA LRLDTGNYSW GSEAVTRKTR ILDVVYNASN  2820
NELVRTQTLV KSAIVQGQEG EAAAEETKKS NHVQRKLDKL EGKELEFYMK KLQRKKGKDF  2880
RIKGNVASGG TMITPPPSTE AHLPVTDRRS LRLSGSGSGS ICNLASETNN VGSKPTSLVV  2940
LHAGEDKDAR SNFASQATLY DDEDNNLGSK PASLVVLNAS EYKENNVGSK LTNAMVLHAS  3000
EDNKLWRRRR RRRSRRRRRR RRRRRGGIIL TAGSSCGNLS NTIKKGCNIP EASSGGGAPF  3060
NTSKKLTTDG DPSHDTIEDA PAAMVDVGKG KGRGKSKGTV AEEVDHWLHI WTKTERMKKM  3120
KNMFSTMHAL LPELPKKINA ATPAPPFLPK NMTNEDRYKL AVEEMLHVVA N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4v7e_BI	6e-54	2758	2878	26	216	40S ribosomal protein S8E
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3010	3024	RRRSRRRRRRRRRRR
2	3014	3024	RRRRRRRRRRR
3	3016	3024	RRRRRRRRR
4	3017	3024	RRRRRRRR
5	3018	3024	RRRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006942.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035765	1e-137	BT035765.1 Zea mays full-length cDNA clone ZM_BFb0082H16 mRNA, complete cds.
GenBank	BT068975	1e-137	BT068975.1 Zea mays full-length cDNA clone ZM_BFb0091C15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825310.1	0.0	uncharacterized protein LOC112900700
TrEMBL	A0A3L6PWA2	0.0	A0A3L6PWA2_PANMI; Uncharacterized protein
STRING	Si009419m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-22	bHLH family protein