PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006912.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HB-PHD

Protein Properties

Length: 804aa MW: 89438 Da PI: 4.5988

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006912.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.5	1.6e-11	666	706	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + L e+F+ ++yps++ +e LA++lgLt rqV+ WF rR Do006912.1 666 QKLHEHFKTEPYPSRSVKESLAEELGLTFRQVSKWFESRRH 706 6799***********************************95 PP
2	PHD	29.5	1.7e-10	266	305	1	37
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHS CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglklesee 37 +C Cg+ + +++++lCdg C++ fH++Cl+++l++e+ Do006912.1 266 FCGTCGSkdVTLGNDIILCDGaCDRGFHQNCLNPPLRTED 305 7****64445****66***********99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	4.32E-10	256	303	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.6E-11	259	350	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.077	264	349	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.81E-20	266	346	No hit	No description
SMART	SM00249	2.4E-8	266	347	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	1.5E-7	266	305	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	267	346	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	4.2E-12	647	705	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.88	651	711	IPR001356	Homeobox domain
SMART	SM00389	2.3E-11	653	715	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-10	656	711	IPR009057	Homeodomain-like
CDD	cd00086	6.02E-11	660	705	No hit	No description
Pfam	PF00046	6.4E-9	666	706	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MDKNTTPVEG NGEIQNGVGS SQNPETLEHQ VLLSTSQTVQ NTMGIRKNYK RAANRGKKGT 60 QGLTGKTYTL RSSDNNVGMV RSTSSSKTTP NEHGQTPVEP AAKRRKRGRP SNKSLTNKSS 120 TDEFSQIRKR VRYILNRMNY EQSLIEAYAS EGWKNQRFVT LDCCVEFELL VSSEFEFFLM 180 FQRCLLELLS SLQFHLQYKI TIARVQACSL DKIRPEKELE RAKAEILRCK LRIREVFQNL 240 DSLLAKGKID ESLFDSEGEI SCDDIFCGTC GSKDVTLGND IILCDGACDR GFHQNCLNPP 300 LRTEDSNIHF PLSFMVSKVI FVSAFIHEHH LFVVPEGDEG WLCPACDCKI DCIDVINELQ 360 GSDLSIDDSW EKVFPEAAAF DNGSKQDDAF DLPSDDSDDN DFDPDMPEEH VASKEEGSSE 420 EEEDEDGGSD SDDSNFLTSS DSDDSEPLTD KKKVDDLGLP SEDSEDDDYD PAGPDSDEDI 480 QKKKSSSDES DFTSDSDDFC EEIKKSGGHD EVSSPPLPDG KVDDMERSTA QANTANSNDG 540 PMETEIDQSV VLPVSGTRQT ERLDYKKLYD EAYGEAPSDS SDDEEWSGKS TPKKGNEESE 600 TDSPAGKGSR STRIVHQSDE LTPQGAQERL HPDSLHGSVD EKHGDLTSNG SNSSTRKGHF 660 GPVINQKLHE HFKTEPYPSR SVKESLAEEL GLTFRQVSKW FESRRHFAKA ASSRKGICLD 720 NHSPENTDSP VAASTQLNEP ERTEMEKQSP KVRSRKNRRK NASRSDVGGS KVDSAEDQVP 780 GLDLADKARQ KAIKLEMKKK KMGR

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MDKNTTPVEG NGEIQNGVGS SQNPETLEHQ VLLSTSQTVQ NTMGIRKNYK RAANRGKKGT  60
QGLTGKTYTL RSSDNNVGMV RSTSSSKTTP NEHGQTPVEP AAKRRKRGRP SNKSLTNKSS  120
TDEFSQIRKR VRYILNRMNY EQSLIEAYAS EGWKNQRFVT LDCCVEFELL VSSEFEFFLM  180
FQRCLLELLS SLQFHLQYKI TIARVQACSL DKIRPEKELE RAKAEILRCK LRIREVFQNL  240
DSLLAKGKID ESLFDSEGEI SCDDIFCGTC GSKDVTLGND IILCDGACDR GFHQNCLNPP  300
LRTEDSNIHF PLSFMVSKVI FVSAFIHEHH LFVVPEGDEG WLCPACDCKI DCIDVINELQ  360
GSDLSIDDSW EKVFPEAAAF DNGSKQDDAF DLPSDDSDDN DFDPDMPEEH VASKEEGSSE  420
EEEDEDGGSD SDDSNFLTSS DSDDSEPLTD KKKVDDLGLP SEDSEDDDYD PAGPDSDEDI  480
QKKKSSSDES DFTSDSDDFC EEIKKSGGHD EVSSPPLPDG KVDDMERSTA QANTANSNDG  540
PMETEIDQSV VLPVSGTRQT ERLDYKKLYD EAYGEAPSDS SDDEEWSGKS TPKKGNEESE  600
TDSPAGKGSR STRIVHQSDE LTPQGAQERL HPDSLHGSVD EKHGDLTSNG SNSSTRKGHF  660
GPVINQKLHE HFKTEPYPSR SVKESLAEEL GLTFRQVSKW FESRRHFAKA ASSRKGICLD  720
NHSPENTDSP VAASTQLNEP ERTEMEKQSP KVRSRKNRRK NASRSDVGGS KVDSAEDQVP  780
GLDLADKARQ KAIKLEMKKK KMGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	755	760	KNRRKN

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006912.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961485.1	0.0	homeobox protein HOX1A isoform X1
Swissprot	P46605	0.0	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A1E5V5D3	0.0	A0A1E5V5D3_9POAL; Homeobox protein HOX1A
STRING	Si021365m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-70	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614]