PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006900.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 300aa MW: 32537.2 Da PI: 6.1642

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006900.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.4	7.5e-42	20	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppG+rF Pt+eel+++yL+++++g++ e+ ++i+ vdiy+++P++L++ +++ ++++w+fF++r++++ +g r+ r+t sgyWkatg+ v+s+ Do006900.1 20 LPPGYRFYPTEEELLTFYLRHRLAGTRPEVGQFIPVVDIYSFHPSQLQAlagAANVgDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSYVYSA 118 79**************************999**********95455333335569********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g k+t+vfy+grap+g+kt+W m+ey++ Do006900.1 119 sANRVIGEKRTMVFYEGRAPTGSKTRWKMNEYKA 152 77788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-47	16	186	IPR003441	NAC domain
PROSITE profile	PS51005	47.684	20	187	IPR003441	NAC domain
Pfam	PF02365	2.0E-22	21	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MLLQRTMTME SGGGGGDPLL PPGYRFYPTE EELLTFYLRH RLAGTRPEVG QFIPVVDIYS 60 FHPSQLQALA GAANVGDTEQ WFFFCPRAER ELHGGRPART TPSGYWKATG SPSYVYSASA 120 NRVIGEKRTM VFYEGRAPTG SKTRWKMNEY KAVADDDRNA AADAPPPLPG APVRLRNEFS 180 VCRVYISTGT LRSFDRRPLN PPGGVDQAAV HYQQHPALPP PASAMTNPMP AAVDVAARNG 240 HQQAAEDNSH DSSSSGSRGG VAVDGAEDAA AIDWDSYSLI TPADLSFGVD DLSRVVWPPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-31	17	185	10	163	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-31	17	185	10	163	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-31	17	185	10	163	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-31	17	185	10	163	NO APICAL MERISTEM PROTEIN
3swm_A	5e-31	17	185	13	166	NAC domain-containing protein 19
3swm_B	5e-31	17	185	13	166	NAC domain-containing protein 19
3swm_C	5e-31	17	185	13	166	NAC domain-containing protein 19
3swm_D	5e-31	17	185	13	166	NAC domain-containing protein 19
3swp_A	5e-31	17	185	13	166	NAC domain-containing protein 19
3swp_B	5e-31	17	185	13	166	NAC domain-containing protein 19
3swp_C	5e-31	17	185	13	166	NAC domain-containing protein 19
3swp_D	5e-31	17	185	13	166	NAC domain-containing protein 19
4dul_A	4e-31	17	185	10	163	NAC domain-containing protein 19
4dul_B	4e-31	17	185	10	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	1e-138	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1E5W855	0.0	A0A1E5W855_9POAL; NAC domain-containing protein 90
STRING	Si026707m	1e-137	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-63	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]