PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006783.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 757aa MW: 82056.3 Da PI: 6.3964 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.5 | 1.5e-15 | 118 | 169 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t+ q e+Le +F + +p++++r++LA+ +gL qVk+WFqN+R+ k Do006783.1 118 HRLTSRQSEILEGFFSVCAHPDENQRRQLAATTGLGLHQVKFWFQNKRTHVK 169 5789********************************************9776 PP | |||||||
2 | START | 88.2 | 1.7e-28 | 274 | 491 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG..CT-TT-S....EEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke..qWdetla....kaetlev 84 e+a +aaqe++ + +a+ p+W ++ e +n+ + q f+e+ + ++ea ras+vv ++ ve l+d + ++ a+t++v Do006783.1 274 EVAKSAAQEVFILCDANGPLWLAVPggsyEVLNKIAYAQAFPEQISvgaigLKTEATRASAVVMLDAKSIVEYLMDAGSngT---FFPglmtTATTTKV 369 578899*********************999************9999********************************5552...44422224444444 PP ECTT.........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 85 issg.........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 + ga qlm+ el+ +sp vp R+ +f+Ry+++l++g+ ++vdvS+d ++ + +++ pSg li+p + +kvt +ehv ++ Do006783.1 370 YN-WpanpeagydGAMQLMTVELVYPSPQVPaRKCTFLRYCERLEQGVVAVVDVSLDDGAN--T------CRKMPSGVLIQPIRHNSCKVTAIEHVRVD 459 33.14677899**********************************************9999..3......89*************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqcek 206 ++ h+++++ ++ gl +ga++wv + rqc++ Do006783.1 460 DSDTHAMFQPCLN-GLLFGARRWVTSMARQCAR 491 **********996.899**************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 100 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-16 | 107 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.576 | 111 | 171 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-15 | 111 | 175 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.74E-14 | 112 | 170 | No hit | No description |
Pfam | PF00046 | 3.8E-13 | 118 | 169 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 146 | 169 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 18.404 | 265 | 494 | IPR002913 | START domain |
CDD | cd08875 | 7.14E-73 | 270 | 490 | No hit | No description |
SuperFamily | SSF55961 | 6.18E-16 | 271 | 491 | No hit | No description |
Pfam | PF01852 | 1.0E-19 | 274 | 491 | IPR002913 | START domain |
SMART | SM00234 | 5.0E-7 | 274 | 491 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.18E-7 | 534 | 714 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MGPASGIGNP SLMGSSGGTS DPSLMGSTDG ICDPSLMGST GGIGDGGLSP NMNATYEMNS 60 SNPFEELQAA NGLGQSPGGG ASRINEVDSS ILVSNNNGRE ESPGDGQEGS QRKKRCLHRL 120 TSRQSEILEG FFSVCAHPDE NQRRQLAATT GLGLHQVKFW FQNKRTHVKH LSGKEENYRL 180 RVENEMLREE NSRFRQAQSN GFCPGCSNDP AQLLIFKELE RLKLHNQLLQ QELQNRMNNE 240 TPMPMSSPPA RLFRLESSSE NFFAIQDDVQ ALTEVAKSAA QEVFILCDAN GPLWLAVPGG 300 SYEVLNKIAY AQAFPEQISV GAIGLKTEAT RASAVVMLDA KSIVEYLMDA GSNGTFFPGL 360 MTTATTTKVY NWPANPEAGY DGAMQLMTVE LVYPSPQVPA RKCTFLRYCE RLEQGVVAVV 420 DVSLDDGANT CRKMPSGVLI QPIRHNSCKV TAIEHVRVDD SDTHAMFQPC LNGLLFGARR 480 WVTSMARQCA RIRDVFHVTN CTLIVTSKGR KTIMKLADNL LANYTSSIAG IPVDAWSVQC 540 GDGTEQDVRI VYRKSDDTTN TAVVCASATF LLPLPMRIVF DMLKNNLLRV KWDVLVNGGC 600 VKDEVRVANG VGSEDAVSIL HVKHGSGANK ETTMVLQNSC YDASGAFMVY ASLDKHVMDM 660 ITSPDGEQAL SNIFLFPAGF FLVPLPDPVK GGAAIGEAGG TVMTAGFQIL MKLARGTGLC 720 PKSVSSAIKI MTENIATIKD TLMNSHPVFY NRNQSTN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006783.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814677.1 | 0.0 | homeobox-leucine zipper protein TF1-like | ||||
Swissprot | Q5ZAY0 | 0.0 | TF1_ORYSJ; Homeobox-leucine zipper protein TF1 | ||||
TrEMBL | A0A1E5VMX0 | 0.0 | A0A1E5VMX0_9POAL; Homeobox-leucine zipper protein TF1 | ||||
STRING | Si000488m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10475 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-117 | protodermal factor 2 |
Publications ? help Back to Top | |||
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