PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006763.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 333aa    MW: 35973.2 Da    PI: 8.8676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006763.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
       Do006763.1 14 KGAWTKEEDQRLVAYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.94.8e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd+l+++++ +lG++ W+ Ia +++ gRt++++k++w+++
       Do006763.1  67 RGNFTEEEDDLIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.326961IPR017930Myb domain
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
SuperFamilySSF466896.7E-3013108IPR009057Homeodomain-like
PfamPF002496.1E-151461IPR001005SANT/Myb domain
CDDcd001672.35E-111661No hitNo description
PROSITE profilePS5129428.02762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2865116IPR009057Homeodomain-like
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1667111IPR001005SANT/Myb domain
CDDcd001673.24E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRSPCCEKS HTNKGAWTKE EDQRLVAYIK VHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDDLIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLLARG  120
IDPKTHRPLS APAAAGAPSS HRQDDLAARS SCSPETSGAC CHSSDDDGAS TPHHGGIDLN  180
LSISPPRELP SPSPSPLPTT QEAEAASSAT VLDAPHAPSE KTILPEGNGL RSPYGCRAGL  240
TMRGINPQTH RPLSVATAAA TPRSNRQEHQ QAARSIFSPE TSCAGHSKDD DSGASVTRLG  300
GIDLNLSISQ PSQPSLPFTS SPPPEEARNR RHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569051e-147AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBankEU9639111e-147EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
GenBankHQ8586921e-147HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977237.11e-119myb-related protein Zm38
TrEMBLA0A3L6T2R31e-119A0A3L6T2R3_PANMI; Myb-related protein Zm38-like
STRINGSi012017m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-86myb domain protein 4