PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 241aa MW: 26070.9 Da PI: 8.9011 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.1e-14 | 37 | 85 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +gy+GVr+++ + +W+AeIr p + r r+ lg+f+tae+Aa a+++a+ + Do006685.1 37 CGYRGVRRRS-SVKWAAEIRQPGD---RNRHCLGSFDTAEQAALAYDQAAYRV 85 79*****888.7*********966...4899*******************986 PP | |||||||
2 | AP2 | 49.2 | 1.3e-15 | 146 | 195 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+A Ir p + r+r +lg+f+taeeAa a+++a+ l+g Do006685.1 146 RYRGVRQRR-SGKWAAAIRRPGD---RQRRYLGNFDTAEEAALAYDHAACLLHG 195 8*****999.7*********955...4888********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-8 | 37 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.44E-19 | 37 | 95 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-18 | 38 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.979 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-23 | 38 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-25 | 39 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.57E-23 | 145 | 204 | No hit | No description |
SuperFamily | SSF54171 | 4.32E-19 | 146 | 204 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-25 | 146 | 204 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-8 | 146 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.52 | 146 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-28 | 146 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 147 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTLISHESMQ QRQRQGQPGL APRGRTMKPA ALVPAQCGYR GVRRRSSVKW AAEIRQPGDR 60 NRHCLGSFDT AEQAALAYDQ AAYRVYGDAA RLNFPERAAA WEAIAEEKAA EAEDARQAPG 120 RGREFSSGET AAEGQPAPLG PCAPKRYRGV RQRRSGKWAA AIRRPGDRQR RYLGNFDTAE 180 EAALAYDHAA CLLHGAGARL NFPERAASWE GEAAMAATAD EANEADTATA ATADTANTMS 240 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-13 | 145 | 210 | 4 | 70 | ATERF1 |
3gcc_A | 5e-13 | 145 | 210 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006685.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821943.1 | 8e-64 | ethylene-responsive transcription factor ERF055-like | ||||
Swissprot | O65665 | 4e-20 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A1E5VL50 | 1e-172 | A0A1E5VL50_9POAL; Uncharacterized protein | ||||
STRING | Sb07g020090.1 | 9e-26 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 7e-13 | ERF family protein |