PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006650.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

SRS

Protein Properties

Length: 357aa MW: 36665.2 Da PI: 7.8427

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006650.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.7	1.3e-67	121	288	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstklss 93 +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq +a+ s++++ ++ ++ ask++r ++q+++s+t++s+ Do006650.1 121 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAASGSASSSPATasaaavaSATASKKPR--LLSSQTTTSHTSTSN 217 57889********************************************9998876554433333456654445555555..4589999999* PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a+++++ +t+s lP++v+++avf+cvrv+s++dge+e+aYq++ +i+Gh+fkG+LydqG+++ Do006650.1 218 ATTPRSYDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIEDGEDEYAYQATATINGHLFKGFLYDQGPDD 288 **9999999******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-62	124	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.0E-27	126	168	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.0E-27	239	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MRQAAAMNYG MADVGMVVVA PAASFHHTHH HHHHHDAAAA AAAAGDPIFP LLSGGPCVLD 60 PDAAKSGSAV PPGSAIQFWQ SQPPPHSPSS AAGANPNPSA SPFAYLKKPL QMLDTGAGSS 120 GSGATTCQDC GNQAKKDCGH NRCRTCCKSR GFDCSTHVKS TWVPAARRRE RQQLAASGSA 180 SSSPATASAA AVASATASKK PRLLSSQTTT SHTSTSNATT PRSYDTTSSH QDASFRDSLP 240 RQVRAPAVFK CVRVTSIEDG EDEYAYQATA TINGHLFKGF LYDQGPDDGR HAATSNEDST 300 AGAPNISELH LGAASASGAG GSGLRESGTN SIVPTELYGS GAQHHILGGS SYGNTMN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MRQAAAMNYG MADVGMVVVA PAASFHHTHH HHHHHDAAAA AAAAGDPIFP LLSGGPCVLD  60
PDAAKSGSAV PPGSAIQFWQ SQPPPHSPSS AAGANPNPSA SPFAYLKKPL QMLDTGAGSS  120
GSGATTCQDC GNQAKKDCGH NRCRTCCKSR GFDCSTHVKS TWVPAARRRE RQQLAASGSA  180
SSSPATASAA AVASATASKK PRLLSSQTTT SHTSTSNATT PRSYDTTSSH QDASFRDSLP  240
RQVRAPAVFK CVRVTSIEDG EDEYAYQATA TINGHLFKGF LYDQGPDDGR HAATSNEDST  300
AGAPNISELH LGAASASGAG GSGLRESGTN SIVPTELYGS GAQHHILGGS SYGNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966498	0.0	EU966498.1 Zea mays clone 294888 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818814.1	1e-180	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-61	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1E5W9M8	0.0	A0A1E5W9M8_9POAL; Uncharacterized protein
STRING	Pavir.Eb03954.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-46	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]