PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 26768.1 Da PI: 8.5997 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.8 | 3.1e-34 | 23 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeekewyfFskrdkky.atgkrknratksgyWkatgkdkevlsk. 95 lp GfrF+Ptdeel+ +yL++kv + ++++ +i+++d+ +++PwdL p + + e +fF+ +++ ++g + ra+ +g+W+ +gk+k v+s Do006636.1 23 LPIGFRFRPTDEELLLHYLRRKVLACPVPA-GIIPDADLARLHPWDLlPpAGGGDADGERFFFHLPATRCwRKGGGAARAAGTGVWRPSGKEKLVVSPr 120 699**************************9.99**************6334433445577888776655516799*********************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+k+tLvf +gr + + +tdW mheyrl Do006636.1 121 CKRPVGTKRTLVFCRGRGRGAARTDWAMHEYRL 153 7889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-46 | 14 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.507 | 23 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-20 | 24 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEGRPGGAWR MLQGPAGAPV AGLPIGFRFR PTDEELLLHY LRRKVLACPV PAGIIPDADL 60 ARLHPWDLLP PAGGGDADGE RFFFHLPATR CWRKGGGAAR AAGTGVWRPS GKEKLVVSPR 120 CKRPVGTKRT LVFCRGRGRG AARTDWAMHE YRLLPAGLHP FHGCAAAVSN PPTGHVSGHG 180 AAADWVVCRI FKRTKPAAHR GREGDDAEEM PSSPSSASSC VTDTSETGDL EQDDGEESSS 240 SSNGGSSCSV ASN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-26 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-26 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-26 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-26 | 23 | 197 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-26 | 23 | 197 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-26 | 23 | 197 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006636.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 1e-123 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817662.1 | 1e-133 | NAC domain-containing protein 83-like isoform X1 | ||||
TrEMBL | A0A1E5W9V1 | 0.0 | A0A1E5W9V1_9POAL; NAC transcription factor ONAC010 | ||||
STRING | Pavir.Eb03721.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 1e-33 | NAC domain containing protein 47 |