PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 331aa MW: 34926.9 Da PI: 6.3383 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.5 | 1.2e-29 | 4 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalp.eeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+l++a+p +e+r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e Do006617.1 4 SCNGCRVLRKGCTEACTIRPCLqwikaPDAQSNATVFLAKFYGRAGLLNLIDAAPgDEQRPAVFRSLLYEACGRIVNPIYGSVGLLWSGKWHLCQAAVE 102 6*************************999*************************62566***************************************9 PP DUF260 94 lallke 99 ++l ++ Do006617.1 103 AVLKGT 108 988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.37 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCTEACT IRPCLQWIKA PDAQSNATVF LAKFYGRAGL LNLIDAAPGD 60 EQRPAVFRSL LYEACGRIVN PIYGSVGLLW SGKWHLCQAA VEAVLKGTPI VQISSEDAEA 120 AAPSPAHLHK AAASCYDIRH VAKPLPPAAG ADAVAGALAP ASSAADAQSS KGGSSVLHKV 180 AKPGRTSFKK RASSSPSSKK QAHHSKLQAS AETEDDNRRR DEEEAHLQLL ADHALSDDTH 240 HHQEASEASL DTDAEVASHV TQAEQATVVE EEDHLQEQQQ QQHPGLDLTL GFGVFAPVAA 300 ASQPTPSADA GCSNGGWTAA EEPGVVGFRF L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805937.1 | 1e-132 | nucleolin 1-like | ||||
TrEMBL | A0A1E5VY00 | 0.0 | A0A1E5VY00_9POAL; LOB domain-containing protein 41 | ||||
STRING | Pavir.J00526.1.p | 1e-137 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-65 | LOB domain-containing protein 41 |