PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006568.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 303aa    MW: 32620.5 Da    PI: 6.8589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006568.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09142189455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Do006568.1 142 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 189
                 8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.56E-11136193No hitNo description
SuperFamilySSF474593.93E-17136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16138202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MADFSSHHSL LLKMPAALTN GHSPNLSSLL FYGQNHGQGA PANANAASGT AAAMAEDASL  60
ESSSAVVDTS PQGSASPMDR KRKATEDSAT LSSAHSKDCK QESKSKRGKR PHKEAEEKST  120
SDDEAPKGYI HVRARRGQAT DSHSLAERVR RERISERMRM LQALVPGCDK VTGKALILDE  180
IINYVQSLQN QVEFLSMRIA SMSPVLYGFG LDSDGLHDHA QKMGGMFQEA LAMPGPLLSQ  240
ASPAPSQAIM DTTSTTPYSL QGQGAISFSQ DNGSSYMMQQ AVGEPTRQEL LNQLVFNNMC  300
SFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353771e-180BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.10.0transcription factor bHLH137-like isoform X1
TrEMBLA0A1E5V0N20.0A0A1E5V0N2_9POAL; Transcription factor bHLH137
STRINGPavir.Fa00144.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-43bHLH family protein