PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006499.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 406aa MW: 43297.7 Da PI: 8.3127

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006499.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.6e-14	279	322	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L k+ Do006499.1 279 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNEELEKK 322 79*************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-13	275	340	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.772	277	322	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.83E-10	279	323	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.3E-15	279	324	No hit	No description
Pfam	PF00170	1.5E-12	279	322	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.39E-23	279	332	No hit	No description
PROSITE pattern	PS00036	0	282	297	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MEFNNGGSSS QRRPAVEEGE GAAPLARQGS VYSLTFDEFQ SALGGAAAGG GCGGVGKDFG 60 SMNMDELIRS IWTAEETQAM ASASGAGAQP APLQRQGSSL TLPRTLSAKT VDEVWHNLVR 120 DEPPEGADGG GQQQAHRQST LGEMTLEEFL VRAGVVRENP APTPAPPPML PPRPVPVAPK 180 SSAFLGNIAG TDAAAAAAAS LGFAPVGMGN LALGNGLMPP SAAGMGASAM SVQTAVNQLD 240 SVGKGYSDLS SPTEPLPYSF QGMIRGRRNG GGVEKVVERR QRRMIKNRES AARSRARKQA 300 YTMELEAEVQ KLKELNEELE KKQVSFLNTA TAGRDYGNAE ERDIWSSLQI HATGTSTYNC 360 NFRNEPPVLV FAHDDRKSCR QVPEMFKDPL GRKKRICLRR TLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MEFNNGGSSS QRRPAVEEGE GAAPLARQGS VYSLTFDEFQ SALGGAAAGG GCGGVGKDFG  60
SMNMDELIRS IWTAEETQAM ASASGAGAQP APLQRQGSSL TLPRTLSAKT VDEVWHNLVR  120
DEPPEGADGG GQQQAHRQST LGEMTLEEFL VRAGVVRENP APTPAPPPML PPRPVPVAPK  180
SSAFLGNIAG TDAAAAAAAS LGFAPVGMGN LALGNGLMPP SAAGMGASAM SVQTAVNQLD  240
SVGKGYSDLS SPTEPLPYSF QGMIRGRRNG GGVEKVVERR QRRMIKNRES AARSRARKQA  300
YTMELEAEVQ KLKELNEELE KKQVSFLNTA TAGRDYGNAE ERDIWSSLQI HATGTSTYNC  360
NFRNEPPVLV FAHDDRKSCR QVPEMFKDPL GRKKRICLRR TLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006499.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802824.1	1e-166	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-109	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A1E5WFW8	0.0	A0A1E5WFW8_9POAL; BZIP transcription factor TRAB1
STRING	Pavir.Ba02029.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	9e-34	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]