PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 90aa MW: 10184.8 Da PI: 8.7545 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 66.9 | 3.9e-21 | 6 | 89 | 100 | 180 |
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fefnv 180 +I++a+ g++++H +D+++ G+QW+ Ll+ LasR++g p+++iT++++p+++ + ++ee++ L+k+A+e+g+p f+f++ Do006463.1 6 MTIMQAMVGKSKLHXVDYGMCFGFQWVGLLHLLASREGGLPEVKITAIDNPKPKtgPAVRIEEIECWLRKYAHEFGLPsFKFHT 89 68*************************************************999999********************6699997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.999 | 1 | 90 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-18 | 6 | 89 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
LTFSTMTIMQ AMVGKSKLHX VDYGMCFGFQ WVGLLHLLAS REGGLPEVKI TAIDNPKPKT 60 GPAVRIEEIE CWLRKYAHEF GLPSFKFHTI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006463.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008677891.1 | 2e-37 | scarecrow-like protein 34 isoform X1 | ||||
Refseq | XP_008677892.1 | 2e-37 | scarecrow-like protein 34 isoform X2 | ||||
TrEMBL | A0A1E5VL20 | 3e-60 | A0A1E5VL20_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.J36189.1.p | 2e-37 | (Panicum virgatum) | ||||
STRING | GRMZM2G106356_P01 | 6e-37 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22738 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59450.1 | 1e-15 | GRAS family protein |