PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006292.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 596aa    MW: 62760.4 Da    PI: 7.436
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006292.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31338396259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Do006292.1 338 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGSHNHP 396
                 7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-34322398IPR003657WRKY domain
SuperFamilySSF1182906.41E-28330398IPR003657WRKY domain
PROSITE profilePS5081130.561332398IPR003657WRKY domain
SMARTSM007742.1E-37337397IPR003657WRKY domain
PfamPF031061.6E-26339396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MMESYLGKRK LMSGNGSAPG AEREPTGFQE VALGYGDNAG AEGAEARPRA VVGEMDFFKT  60
EKRKEEAAAG RAHSAAPDDL SINKHDLTIN MGLHVGRSKS RSEESIVEDG VSSNEVLDHR  120
ETKAELALAK SEIGRLNEEN KQLKVMLSRM TTNYNSLHMQ VLTVMKQRNN HRGPGGAPSH  180
ELNNMDPENK DKQDGSLLPR QFISLGTAAP PDEQRPRSVC ADIRGGDCSA SPSNTDAAMP  240
PPVDYCPGNG NGVMINSKDV MPLPTFEHHQ RHHRAHEMEQ RGCSPDDPPP HHVPKGWHPN  300
NKVPKFLPAK GHEPVPEAAT MRKARVSVRA RSEAAMISDG CQWRKYGQKM AKGNPCPRAY  360
YRCTMAAGCP VRKQVQRCAE DTTVVITTYE GSHNHPLPPA AVPMAKTTAA AASMLLSGSM  420
PSADGSLMAG SNFLARAVLP CSSNVATISA SAPFPTVTLD LTQPAPGAQQ QQPPQRPDPA  480
QLQAVLAEAA RPVPVPQLFG QKLYDPSILS AAQAAAAGTN KVAASADAGD TVSAAAVIAS  540
DPNFPAVLAA AIKSYIGGSS SGGGGGAGGS SGTMPPPPAS SGGDSNRDDK IGEQES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22328398877Probable WRKY transcription factor 4
2lex_A2e-22328398877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A1E5W9Z00.0A0A1E5W9Z0_9POAL; WRKY transcription factor 42
STRINGPavir.Ca00949.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-79WRKY family protein