PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006291.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 85aa    MW: 9514.61 Da    PI: 5.0806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006291.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-081560446
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     W+  E + + +a + +G g    W+++++ mg  ++++++++++ +
       Do006291.1 15 WSLKENKMFEEALAYYGEGtpnLWDKVSSAMGGSKSAEEVRLHYED 60
                     ********************************99**********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-51164IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-111470IPR009057Homeodomain-like
PfamPF002494.6E-71561IPR001005SANT/Myb domain
CDDcd001676.64E-51562No hitNo description
PROSITE profilePS500906.6441562IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAGSRSSSPN SISGWSLKEN KMFEEALAYY GEGTPNLWDK VSSAMGGSKS AEEVRLHYED  60
LVDDVKMIES GRVPYPKYKT QGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-21182177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9551811e-85EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds.
GenBankKJ7279011e-85KJ727901.1 Zea mays clone pUT5995 MYB-related transcription factor (MYBR87) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961187.12e-43protein RADIALIS-like 3
SwissprotQ1A1732e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5W9U06e-56A0A1E5W9U0_9POAL; Uncharacterized protein
STRINGPavir.J09915.1.p1e-42(Panicum virgatum)
STRINGSi024486m6e-43(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-22RAD-like 1