PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006254.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 342aa    MW: 35839 Da    PI: 5.0254
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006254.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-072258437
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                r C+ +  ++++l+C+ ++ +lC+ C    H g    H
  Do006254.1 22 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrH 58
                68*************************9999.435567 PP
2zf-B_box24.46e-0861106342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  + C+ +e+ ++   C+ +   lC+ C   +H+       H++vp+
  Do006254.1  61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERVPV 106
                 679*****************************66899999999986 PP
3CCT691.2e-23259301143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+
  Do006254.1 259 REARLMRYREKRKNRRFNKTIRYASRKAYAETRPRIKGRFAKR 301
                 9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6841963IPR000315B-box-type zinc finger
SMARTSM003365.2E-51963IPR000315B-box-type zinc finger
PfamPF006438.6E-62259IPR000315B-box-type zinc finger
CDDcd000215.90E-72263No hitNo description
PROSITE profilePS5011910.50959106IPR000315B-box-type zinc finger
PfamPF006433.3E-661106IPR000315B-box-type zinc finger
SMARTSM003361.2E-964106IPR000315B-box-type zinc finger
PfamPF062037.6E-18259301IPR010402CCT domain
PROSITE profilePS5101716.827259301IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDAAVELEQK PAVGYWGMVG ARPCDACAAE PARLHCRADG AFLCPGCDAR AHGAGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERVPVAPFF GALADAPQPF  120
PSPAFAAAAA AEGQAQGDAA VAADDDGSNE AEAASWLLPE PDNSHEDSAA ATTDAFFPDS  180
DAYLGVDLDF ARSLDGIKAI GVPVAPPELD LAAGGFFYPE HSMNHSMSSS EVAVVPDALA  240
AGGAPTAPAV PVASRGKERE ARLMRYREKR KNRRFNKTIR YASRKAYAET RPRIKGRFAK  300
RCSAEAGEAE DEALLEHEEV VACFSPAVSA HAASDGVVPS FC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006254.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811633.11e-176zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A1E5VPT90.0A0A1E5VPT9_9POAL; Uncharacterized protein
STRINGSb04g025660.11e-171(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-37CONSTANS-like 3