PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006170.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 460aa MW: 52199.6 Da PI: 7.0662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006170.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.4e-20	57	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +Y+ ++GF ++++++++ +g +++tf Csk g+++ ++ ++ ++ +tgCkak+ vk + +++wev+ leleHnH+l Do006170.1 57 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGMKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 143 6**************99988..9999**********99877..7777778899*********9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-18	57	144	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	7.2E-7	195	227	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.409	195	231	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.6E-4	206	233	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MEEEEYSTES SNEEEVQEDG EKEGNAAEID VFKPVDIDPA CLPKVGMIFD SEEDAFQFYV 60 TYGCHAGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGM KTGCKAKMIV 120 KDAHFQNRWE VIVLELEHNH PLDPSLLKFK RHLKNSPFLL NPPRMSESEG PQSSSAVVLS 180 SRVSEHINQT TKVDYKVAYD NVEDDIWCLC RLFQSKGILC RHALTVLRQE LVLMIPPKYI 240 IHRWCKDCKQ TCATISQPVS AGNQELGSYD DLYKLGHQYF AEVVEFGSMN AESKEYALSI 300 MREIRDKVIS YEKSLREQRV DSHVSTTNFA YNPVNEDFTD DTLPISLSTK GWDLTQGQSK 360 RSRKKKLATP TVLDTLKKKT KRAYNKRRNA TANTLNTAVT ATDSVTDGTN VQQNPVNEGW 420 PSTGPETFPY GVETISFDLS QYNNAPSFHW PESSSRSQLQ

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MEEEEYSTES SNEEEVQEDG EKEGNAAEID VFKPVDIDPA CLPKVGMIFD SEEDAFQFYV  60
TYGCHAGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGM KTGCKAKMIV  120
KDAHFQNRWE VIVLELEHNH PLDPSLLKFK RHLKNSPFLL NPPRMSESEG PQSSSAVVLS  180
SRVSEHINQT TKVDYKVAYD NVEDDIWCLC RLFQSKGILC RHALTVLRQE LVLMIPPKYI  240
IHRWCKDCKQ TCATISQPVS AGNQELGSYD DLYKLGHQYF AEVVEFGSMN AESKEYALSI  300
MREIRDKVIS YEKSLREQRV DSHVSTTNFA YNPVNEDFTD DTLPISLSTK GWDLTQGQSK  360
RSRKKKLATP TVLDTLKKKT KRAYNKRRNA TANTLNTAVT ATDSVTDGTN VQQNPVNEGW  420
PSTGPETFPY GVETISFDLS QYNNAPSFHW PESSSRSQLQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957762.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1E5WBR9	0.0	A0A1E5WBR9_9POAL; Uncharacterized protein
STRING	Si028955m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	3e-12	FAR1-related sequence 4