PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006093.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 343aa    MW: 38887.5 Da    PI: 6.5101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006093.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1813.1e-5681371129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k
  Do006093.1   8 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DVIKDVDLYKIEPWDLQEkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYT-K 104
                 69****************************.9***************952444443555**************************************.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                 + lvg++ktLvfy+grap+g+k+dW+mheyrle
  Do006093.1 105 NCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 137
                 99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-616157IPR003441NAC domain
PROSITE profilePS5100559.9458157IPR003441NAC domain
PfamPF023651.1E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDTAFSHVPP GFRFHPTDEE LVDYYLRKKV ASNKIDLDVI KDVDLYKIEP WDLQEKCKIG  60
TEEQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKP IYTKNCLVGM RKTLVFYRGR  120
APNGQKSDWI MHEYRLETTE NGITSEEGWV VCRVFKKRVA TVRRMVDGAP CWFDDHLAGF  180
MPPDLGSPRQ LMHHHHPSAS AAAYGGQQLY HCKPELEYHH LLPSQEAFLQ QLPQLESPKP  240
PAYVAHGSSS LQSSDEASRY TTAQQPPMES AYMVAGDDDS VTDWRVLDKF VASQLFSHGD  300
GTPKEAGYSN PAQVFQAENK QPQEVLDYAS TSASGGGEAD LWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51815817166NO APICAL MERISTEM PROTEIN
1ut4_B6e-51815817166NO APICAL MERISTEM PROTEIN
1ut7_A6e-51815817166NO APICAL MERISTEM PROTEIN
1ut7_B6e-51815817166NO APICAL MERISTEM PROTEIN
4dul_A6e-51815817166NAC domain-containing protein 19
4dul_B6e-51815817166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750920.0KT075092.1 Panicum virgatum secondary wall NAC master switch (SWN8A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953268.10.0NAC domain-containing protein 7
RefseqXP_004953269.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-124NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1E5UN670.0A0A1E5UN67_9POAL; NAC domain-containing protein 7
STRINGSi017679m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-115NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]