PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 25524.8 Da PI: 8.0738 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 5.8e-31 | 17 | 93 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s ++++vg++ktLvfy grap+g+k+ Wvmhe+rl Do006064.1 17 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaaSRAVVGMRKTLVFYLGRAPNGVKSCWVMHEFRL 93 567*************************************99878888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.708 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-37 | 15 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-15 | 20 | 93 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MWWSLFWITR ADAAKLTASE WYFFSFRDRK YATGSRTNRA TKTGYWKATG KDREVRSPAA 60 SRAVVGMRKT LVFYLGRAPN GVKSCWVMHE FRLDSPHTPP KEDWVLCRVF QKRKDSEQDT 120 AAGSSSPTFA GSSQAVALPD DQPMMDAYVD QTGSSAVGFP PPQEHVGGFD PLMLHYNSVL 180 SHFPQEVSSS PMMALGLGSG GVGNGCGFFY DTGFEDMAAN IGGMGFPQGW MG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-29 | 12 | 118 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-29 | 12 | 118 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-29 | 12 | 118 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-29 | 12 | 118 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-29 | 12 | 118 | 64 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-29 | 12 | 118 | 64 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006064.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017006 | 1e-157 | KM017006.1 Miscanthus lutarioriparius NAC8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976221.1 | 1e-124 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-38 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1E5WBM1 | 1e-172 | A0A1E5WBM1_9POAL; NAC domain-containing protein 21/22 | ||||
STRING | Si010799m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-53 | NAC domain containing protein 74 |