PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005959.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 336aa    MW: 36048.6 Da    PI: 8.697
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005959.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.36.3e-16196236242
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 
                 CqvegC+adls+ak+yhr+hkvCevh+kap+v+ +      
  Do005959.1 196 CQVEGCKADLSSAKDYHRKHKVCEVHAKAPKVIKQHDITIL 236
                 ********************************988765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-15188230IPR004333Transcription factor, SBP-box
PROSITE profilePS5114113.075193270IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-14195237IPR004333Transcription factor, SBP-box
PfamPF031101.3E-10196233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MIETSKASAT SFHIHRREQQ LRFLILLGRI EIFSSAMGSF GMNWNQKNSM VWDWENLAPS  60
VPNEITRHGS ANSSGGTLTS SSELGHGSSK SSISASIDSP CGVGNSLEFN FAAVERHVKD  120
VGKNGRVDDL RTSPSSMIAF SHGEPSISLK LGKRAYFENV CGRQDVKNSA PSTVTSALTV  180
VKKTKVSQQN AKNSYCQVEG CKADLSSAKD YHRKHKVCEV HAKAPKVIKQ HDITILCSDL  240
HFTPVIISGV ETSATASNSN GAPELGRALS LLSDCSWGSS STVIQQANSH AHAGALPPLA  300
VSNTVMHPLN PSLGRFWHDN PPPLDGTAQI QALAHL
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005959.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847070.0KF184707.1 Saccharum hybrid cultivar R570 clone BAC 084G07 complete sequence.
GenBankKF1848330.0KF184833.1 Saccharum hybrid cultivar R570 clone BAC 001I10 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966343.11e-100squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_004966344.11e-100squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_004966345.11e-100squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_022681748.11e-100squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR51e-61SPL12_ORYSI; Squamosa promoter-binding-like protein 12
SwissprotQ5Z8182e-61SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLA0A1E5W8160.0A0A1E5W816_9POAL; Squamosa promoter-binding-like protein 12
STRINGSi006471m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.44e-21squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]