PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005820.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 764aa    MW: 86276.8 Da    PI: 8.8608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005820.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-095696345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W+++E   ++da +++G++ Wk+I+  +g g++  +++s + 
       Do005820.1 56 KWSKDELTHFYDAYRRHGKD-WKKISLAVG-GKSSDMVRSLYS 96
                     8*****************99.*********.*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.16652109IPR017884SANT domain
SuperFamilySSF466899.72E-95499IPR009057Homeodomain-like
CDDcd001672.06E-45693No hitNo description
PfamPF002498.4E-85695IPR001005SANT/Myb domain
SMARTSM011358.7E-38500601IPR033471DIRP domain
PfamPF065844.2E-31500600IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
LLSLKSRTVL MAPAKGSRTI NKTIIKGYED QQQYDDPPSS SKAKQKKRKI SDLDPKWSKD  60
ELTHFYDAYR RHGKDWKKIS LAVGGKSSDM VRSLYSVHRT FLSLPERQAT AMGFIALVTG  120
HRNASDKSKS HIGDDQMVRA SGKVRRRGDA TQQKATEGPD LHNCHEGTIS GFSSCFKKRY  180
YGEFVRNSRN HAVRRRTPRI PVIAPADRNT IDEATPGIEN IINTTKRKYE ATNHDCAFVP  240
VNECSPDRSS ATAEANKAGQ DHTFLETNRT RDAAICQQHL KKTRFQETME DDQTSKVEHE  300
RVMASNIISE DDMLVLDVLN SLVNAPSKTS KVEINVHSGS HGKTDSGLSH RREEGHPTID  360
DLSKEGKPFC KSGASKTRKK RHKKLLGAEV PAEAQNTSVN NLVLPDTQRV GITDDSSLCT  420
NSGRVGIPEA SEDVSAEVPS APTEIKPEIR ISRRTRRKSQ MHCKTKHISC NEGSDNLQAK  480
KLLHCLSSES LRRWCTYEWF YSAVDYPWFS NNEFVHYLDH AKLSHLSRLT RSEWSAIRSS  540
LGKPRRFSDH FLAVEKEKLE DYREKVRKIY AQLSDGSRDS LPADLARPFS IGQEVIVRHP  600
SSRELCDGKV MMMGPDCYNV HFVNPDLGFE IVKDTDCMPI SWLYNRPDNM RRSYLSNNAY  660
SILDTERIPD LTPSENWDHA VNGVTVPELP KSLLLTSDEQ LKVESVVNGE RPPYRNTSDV  720
PTKSRGHPDN NAGHNDELES YITAFVQRSL SQARQMVDEA MQVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968511.10.0protein ALWAYS EARLY 2
TrEMBLA0A1E5WH420.0A0A1E5WH42_9POAL; Protein ALWAYS EARLY 3 (Fragment)
STRINGSi000260m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-65DNA binding