PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do005819.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 469aa MW: 49264 Da PI: 9.4789

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005819.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F r nL+ H r H Do005819.1 72 YVCEVCGKGFQRDQNLQLHRRGH 94 9********************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-6	72	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0081	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.822	72	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	44	114	144	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.96E-7	144	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MMLKDLAAIQ QQQLAAEENM SNLTSASGDQ ASVSSHPLPP PAKKKRSLPG NPDPDAEVIA 60 LSPRTLMATN RYVCEVCGKG FQRDQNLQLH RRGHNLPWKL KQRNPKEVVR KKVYVCPEAG 120 CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDRCAKRYAV HSDWKAHSKV CGTRERDSFI 180 THRAFCDALA EESARAVTAA AAVAGQHAGM LFSQGAGGGE GGASGGLHLP SVLDPSQPLG 240 GHGMSLQELC LKREQQQQQF APSWLTAQQQ QHLELQAAGA GNSAMFGSAR PLDQEYMGSS 300 TPESTAQPAG LGSGFSPSAA GTAASAHMSA TALLQKAAQM GATLSRPSNQ GQMASTHSTS 360 TTSVATANAA AAAAGNVPST GAGALGFGAS HHFGPEERRT RTDRDAGNGG NAAGAARGGN 420 DGLTRDFLGL RAFSHGDILS MAGFDPRMSS ASSAAAYEQG HQSSKQWHV

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MMLKDLAAIQ QQQLAAEENM SNLTSASGDQ ASVSSHPLPP PAKKKRSLPG NPDPDAEVIA  60
LSPRTLMATN RYVCEVCGKG FQRDQNLQLH RRGHNLPWKL KQRNPKEVVR KKVYVCPEAG  120
CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDRCAKRYAV HSDWKAHSKV CGTRERDSFI  180
THRAFCDALA EESARAVTAA AAVAGQHAGM LFSQGAGGGE GGASGGLHLP SVLDPSQPLG  240
GHGMSLQELC LKREQQQQQF APSWLTAQQQ QHLELQAAGA GNSAMFGSAR PLDQEYMGSS  300
TPESTAQPAG LGSGFSPSAA GTAASAHMSA TALLQKAAQM GATLSRPSNQ GQMASTHSTS  360
TTSVATANAA AAAAGNVPST GAGALGFGAS HHFGPEERRT RTDRDAGNGG NAAGAARGGN  420
DGLTRDFLGL RAFSHGDILS MAGFDPRMSS ASSAAAYEQG HQSSKQWHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-21	145	195	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-21	145	195	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	111	KLKQRNPKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105663	0.0	AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
GenBank	AK250971	0.0	AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008673585.1	0.0	protein indeterminate-domain 7
Swissprot	Q9LRW7	1e-110	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1E5WHT5	0.0	A0A1E5WHT5_9POAL; Protein indeterminate-domain 11
STRING	Pavir.Eb00288.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	6e-95	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]