PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do005779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 47285.8 Da PI: 6.6532 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.6 | 0.00026 | 325 | 364 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +Ik+L+ Do005779.1 325 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 364 7889999**********999.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.118 | 314 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-8 | 325 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-5 | 325 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 438 aa Download sequence Send to blast |
MASPPPPPSL PTSAAAAAAG NGRATSTSPV DALFLQNLMS RVQLRPPFLD TNSFLTQDLD 60 DFLLNEFAAL SAAAGASDDE EEEEEDEEGR LAGGEGSGEA RRRRMLAREE AKLEREIVRM 120 VLAGEAEEKL KPNSGQSVAV GDHHLCVGFH DEVGGEYRVW EWHGHVMLFD DEDGYSAEYI 180 YGNHFEPLAA AAARAKKKEK EKREKDLSMG LRDLVVGTDE GGNGGQKNGS SGGPRVVRRN 240 VVNSPAAPAS QVRKLKFTGR SCGSGQDHLM KWTAAGETMT SDGSRLRGSK RIKTTTAAET 300 AQAPQHGLRC NAKPTRNQST KAPCKRSQKL GDKITALQQL VSPYGKTDTA SVLHEAATCI 360 KHLHEQIQIL TASYPAISSP ASQQDTGEEK GASDLRRRGL CLAPLSPDVV KLVASAEAAL 420 RHRDTADTED RWRWLGTL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 284 | 292 | RLRGSKRIK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do005779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984761.1 | 1e-121 | uncharacterized protein LOC101772545 | ||||
TrEMBL | A0A1E5UIZ2 | 0.0 | A0A1E5UIZ2_9POAL; Uncharacterized protein | ||||
STRING | Si036840m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27660.1 | 8e-20 | bHLH family protein |