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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Do005733.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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| Family |
bHLH |
| Protein Properties |
Length: 465aa MW: 48258.5 Da PI: 6.1231 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do005733.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 15.9 | 2.4e-05 | 313 | 333 | 35 | 55 |
TS-STCHHHHHHHHHHHHHHH CS
HLH 35 skKlsKaeiLekAveYIksLq 55
s++ +Ka++Le+A+eY+k Lq
Do005733.1 313 SERIDKASMLEEAIEYLKTLQ 333
7899****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
TAPGDELAEL LWDNGPALRR APPPFQPFTC SAAGSSRAHE LKRHAAAGMG SVPLGLHDAV 60
GLAGLTVHDD DDDAVPWLHC PVVDDGDGDM APLPQEYCAG LLSEYSGLPA APPASHGAAV 120
PASRAAPPEA AEVNQAPPPS GEGVMNFTFF SRPLQRPQAS AAATATASNP VESTVVQAAT 180
NRLRSTPLFS EQRMAWLQPP KGPRATAAAA PPAPQARPLP PDHGHGEVAA VTQRRLQPEA 240
RAPDAAAATA VVTASSVCSG NGDRSQHKRS SHQQLADCSV SPDEDLDDEG GAMRRSAARS 300
NKRSRTAEVH NLSERIDKAS MLEEAIEYLK TLQLQVQMMS MGTGLCVPPM LLPAMQMPHP 360
MAHFPHLGMG LGFGMGAAAA FDMARVAVAH FPCPPMAMPP GPMFGVPGQA MPSPAAVFAH 420
MTGSGAAPAE QMEAAAAAPP ARRGSEADHP PAPVVAQELQ HPKQT
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137616 | 6e-39 | AC137616.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0069I13, complete sequence. |
| GenBank | AC137621 | 6e-39 | AC137621.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111O13, complete sequence. |
| GenBank | AK287958 | 6e-39 | AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence. |
| GenBank | AP014961 | 6e-39 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 6e-39 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
| Publications
? help Back to Top |
- Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
[PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
N Biotechnol, 2011. 28(6): p. 788-97
[PMID:21549224]
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