PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005732.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 382aa    MW: 40854.6 Da    PI: 6.6247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005732.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11171250555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC................................TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkas.............................kapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR++iN+++ eL +++P +                                ++  ++Ka+iL  A +Y+k+Lq
  Do005732.1 171 HIIAERKRREKINKRLIELSTVIPGLKkvpqnetllpglvlctksliltrisrlmqLLTCNQMDKATILSDAAKYVKELQ 250
                 889**********************777***************************9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.84E-13161198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.849166249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-8171250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15171254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-9171254No hitNo description
SMARTSM003531.0E-11172255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.84E-13231260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEDSSMFMQW AMDTLLHEHP EPAVDSGCGE TTFPSLQALR DASDAVEMVR ELMADEAHAA  60
NSWSSGDGDI TDGGGGGGTV PAPAAAMECY SSWPQSPNSF RRAPPPPSNN NNLQAVSWNF  120
VTGSAQPGND GMVEETTPRS LPEVVHGSLP TRRTSPKRSG VASSASYAPD HIIAERKRRE  180
KINKRLIELS TVIPGLKKVP QNETLLPGLV LCTKSLILTR ISRLMQLLTC NQMDKATILS  240
DAAKYVKELQ QRLKALKEEV AAGSNARSNE TVVLVKKPCN AVAAPDENGS SPSSMSSSSG  300
PPEAMKKSAL PEIQARFSEK ITMVRIHCGS GKGVAATVLT EAEELGLSIV HANVMPFSAC  360
TVIITITAKA SLFSFLFAFI LY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005732.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806554.11e-154transcription factor bHLH18-like
TrEMBLA0A1E5VFM50.0A0A1E5VFM5_9POAL; Uncharacterized protein
STRINGSi024086m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-25bHLH family protein