PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 23031.2 Da PI: 9.7787 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.9 | 7.4e-08 | 37 | 100 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+a ++p+k ++ + L A YIk+L+ Do005620.1 37 KDVEKNRRLHMKGLCLKLSSLIPPAArhasliseaaasaSNPNKDtVTQLDQLDSAAAYIKQLK 100 689*********************666************7777777****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 7 | 1 | 32 | No hit | No description |
PROSITE profile | PS50888 | 8.677 | 31 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-10 | 35 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-8 | 36 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-5 | 37 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKSRRQSSGG SSAGATAAGE GNTHSSGGGG GCKLERKDVE KNRRLHMKGL CLKLSSLIPP 60 AARHASLISE AAASASNPNK DTVTQLDQLD SAAAYIKQLK ERIEALKRRK EGGLGGSGCK 120 GGTAAAGISA GGGAAAVRMP VIEVRYQDGT LDVVLISEAG RPFKLHEVIT ALEQEGAEVV 180 SASFSVVGDK IFYTIHSQAL SPRIGLDAAR VSERLQDLLL LV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038818 | 1e-154 | BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds. | |||
GenBank | KJ726868 | 1e-154 | KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967963.1 | 1e-125 | transcription factor bHLH168 | ||||
TrEMBL | A0A1E5WHH6 | 1e-157 | A0A1E5WHH6_9POAL; Uncharacterized protein | ||||
STRING | Si002847m | 1e-124 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 1e-17 | bHLH family protein |