PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005608.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Dof
Protein Properties Length: 172aa    MW: 17446.7 Da    PI: 10.1286
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005608.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof91.85.7e-2985140458
      zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 
                 + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v   + grr+ 
  Do005608.1  85 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 140
                 5789*****************************************98765255544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-1985127IPR003851Zinc finger, Dof-type
PfamPF027013.3E-2686139IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.52787141IPR003851Zinc finger, Dof-type
PROSITE patternPS01361089125IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MANLPDADAA GFKLFGKVIQ PPEAHHRAAE EGGASTSPPP ALPLATATPA AVLPPAAPPQ  60
SPPLPTPPPL SLQQAAGAGA GGSGEPLPCP RCGSRETKFC YFNNYNVRQP RHLCRACRRY  120
WTAGGALRRV ASASPGRRRP RPAARSAVAA AAAAIATASS ASAADEDGGG ER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546093e-88EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969505.16e-53dof zinc finger protein 5-like
TrEMBLA0A1E5V2T51e-115A0A1E5V2T5_9POAL; Uncharacterized protein
STRINGSb03g030850.14e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147161620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.14e-21Dof family protein