PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005497.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 566aa    MW: 58749.3 Da    PI: 7.3463
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005497.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.42.6e-34202295283
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssas 83 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +             +++++++ ++s ++s++
  Do005497.1 202 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptataanaAAPPSTSTHPDSAENSDD 295
                 79**************************************************************777776555544222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-31202296IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257204262IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
YGLRRGGWTR IAGVGAAVAA GKKAGDLDPR HHHRVPVPHG RDGGDGGGGG GGGGGARQEA  60
DEQQQQHNHR LLQLHQEVQD QADTPPVPVF QLQQLQAAAA VRQRGLSAEY ALLAPMGDAG  120
QSHHHLHHAF QPQLLSFGGV GGQHHVHQFA AQAQGPAAAS HSRSRGGAGE IVAATPASHS  180
RVRGGGGGEI VAVQGGHIVR STGRKDRHSK VCTARGPRDR RVRLSAHTAI QFYDVQDRLG  240
YDRPSKAVDW LIKNAKDAID KLEVLPAWQP TATAANAAAP PSTSTHPDSA ENSDDQAQAI  300
TVAHTAFDFP GAGGAGGGGS GAGFLPASLD SDSIADTIKS FFPMAGTAGG EASSSTAAAQ  360
SSAMGFQSYT PDLLSRTGSH SQELRLSLQP LPDPMFHHQH QQQDRSHGHG GNGSAQQTLF  420
PGAASYSFGG GAMWAEQAQG QRMVPWNVPD PGGGSTGGYL FNVSQQAAHM QAALGAAQSQ  480
FFFQRGPLQS SNQPSERGWP ETVEADNPMQ QHQGGLSPTV SAIGFAPGIG FSGFRIPTRI  540
QGDEEHNGGG GNGDKPPPSV SSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20209262154Putative transcription factor PCF6
5zkt_B1e-20209262154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A1E5UNZ70.0A0A1E5UNZ7_9POAL; Transcription factor PCF5 (Fragment)
STRINGSi004564m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-35TCP domain protein 10