PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | SRS | ||||||||
Protein Properties | Length: 158aa MW: 16352.1 Da PI: 10.7201 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 113.2 | 3.9e-35 | 12 | 120 | 2 | 105 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskke 99 +sg+a+C+dCGnqakk+C+h+RCRtCC+srgf+C thv+stWvpaa+rrer q + as aa a +k++r +++++++ s+t +s+a+++++ Do005486.1 12 GSGAATCHDCGNQAKKGCSHSRCRTCCNSRGFECDTHVRSTWVPAARRRERLQLAGGASPPPAA---PAVAKKPRLAcQTTTTTTNSRTFTSNATTPRS 107 57899**********************************************9998888766654...56667777662445566666778899999999 PP DUF702 100 letss.......l 105 l+tss Do005486.1 108 LDTSSshqgnssA 120 9998755555553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-28 | 15 | 105 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.9E-25 | 17 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MLDQGRGGSG SGSGAATCHD CGNQAKKGCS HSRCRTCCNS RGFECDTHVR STWVPAARRR 60 ERLQLAGGAS PPPAAPAVAK KPRLACQTTT TTTNSRTFTS NATTPRSLDT SSSHQGNSSA 120 PPTSTSAAPQ PRPPTCTAAP APRSSSASWA TVTRHELM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959412 | 3e-63 | EU959412.1 Zea mays clone 218086 LRP1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962238.1 | 3e-50 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_022680709.1 | 3e-50 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A1E5WD48 | 1e-107 | A0A1E5WD48_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01442.1.p | 7e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-23 | Lateral root primordium (LRP) protein-related |