PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005424.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 345aa    MW: 38603.7 Da    PI: 9.8455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005424.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.46e-49161412128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +
  Do005424.1  16 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSI 113
                 79***************************.89***************888889********************************************** PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy g+apkg +++W+m+eyrl
  Do005424.1 114 GLKKTLVFYVGKAPKGLRSSWIMNEYRL 141
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-5615161IPR003441NAC domain
PROSITE profilePS5100555.24615161IPR003441NAC domain
PfamPF023655.6E-2417141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MARGGEDGQH AHDMVMPGFR FHPTEEELID FYLRRRVEGK RFNIELINLV DLYRYDPWDL  60
PALASIGDKE WFFYVPRDRK YRNGDRPNRV TPSGYWKATG ADRMVRVEGN RSIGLKKTLV  120
FYVGKAPKGL RSSWIMNEYR LPHGEADRYQ KEISLCRVYK RPGIEDNFHL TTTTTRSSGS  180
KAATTMEKKH HRTSASPRLA PMFDGGHSSA HMNKPISGAN TVMTSSAAAR VATMAPQTSM  240
AFLSTASLSS TTSTEEDGTS LYHLKQGANP PLLPPSTHAL LNANSTTMAT IPIDELSRAI  300
GSYNNQGNPN QPLPSQGPLL PFPSMEKIWD WNPLLESPKV CTTFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-531716119165NO APICAL MERISTEM PROTEIN
1ut4_B3e-531716119165NO APICAL MERISTEM PROTEIN
1ut7_A3e-531716119165NO APICAL MERISTEM PROTEIN
1ut7_B3e-531716119165NO APICAL MERISTEM PROTEIN
3swm_A4e-531716122168NAC domain-containing protein 19
3swm_B4e-531716122168NAC domain-containing protein 19
3swm_C4e-531716122168NAC domain-containing protein 19
3swm_D4e-531716122168NAC domain-containing protein 19
3swp_A4e-531716122168NAC domain-containing protein 19
3swp_B4e-531716122168NAC domain-containing protein 19
3swp_C4e-531716122168NAC domain-containing protein 19
3swp_D4e-531716122168NAC domain-containing protein 19
4dul_A3e-531716119165NAC domain-containing protein 19
4dul_B3e-531716119165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005424.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973013.10.0NAC domain-containing protein 35
SwissprotQ9ZVP82e-94NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A1E5V4Y20.0A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRINGPavir.Fa02204.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-96NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]