PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do005299.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 489aa MW: 53389.7 Da PI: 8.1932

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005299.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	301.6	2e-92	46	475	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA v++g + +a+ +L+++ +las d+ ++qRlaa+f+ ALa++l++ v++l++al ++++s + aa++ ++++ P++k+++lt+ Do005299.1 46 LINLLYQCAAEVAAGAFDRANYYLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-AEAHLIPAARRHLFDMLPFMKLAYLTT 143 6799*****************************99**********************99777776.345555578888*********** PP GRAS 99 NqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194 N+aIlea+ege+ vH++D++ + + +QW+aL++a+ +R++gpp+lRiT+v++ ske l +++ Lak Ae++++pf+f++ v+ rl++l++++L Do005299.1 144 NHAILEAMEGEKFVHVVDLSgpAANTVQWIALFHAFRARRGGPPHLRITAVHD----SKEFLANMAGVLAKEAEAFDIPFQFSA-VEGRLDELDPDALr 237 ***************9667899***********************....9**********************.799***9996 PP GRAS 195 ...rvkpgEalaVnlvlqlhrll...............................................................desvsleserdev 227 rv++gEala ++v qlhrll +++ + + + ++ Do005299.1 238 hvlRVRSGEALAMSVVAQLHRLLaaddagrrhvpgsscltplqiiarsspssfgellerelntrlqlspgdsssvvsslspqspaqAQQRPAAAKLGSF 336 6667888************************************************************************9996666666679* PP GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 L++v+ lsPk++vv+e ea+hn+++Fler le + ++r + er+ Er +lg+ei vva egaer+erhe+l++W +r+e+aG++ Do005299.1 337 LQAVRALSPKIMVVAEPEANHNAATFLERCLERASA-----------AHRCAAERARAERLVLGEEIXGVVAREGAERKERHERLAQWGRRMEAAGMER 424 ***************************7776432...........245568899*************************************** PP GRAS 327 vplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374 v +s+ +++a+ ll+ + ++ y v ++ ++++++W+++pL+svSaWr Do005299.1 425 VGMSYGGMMEARKLLQSLGwGELYGVVHDarGEAFFFCWHRKPLYSVSAWR 475 ***************88889998553256667************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.844	20	452	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-90	46	475	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MDIFPEDTVS SATSSPASSL YSPSPHPHGY GAWVQELSHN QQGVRLINLL YQCAAEVAAG 60 AFDRANYYLE QITQLASLDA PHTLQRLAAV FADALARKLL NLVPGLSRAL LSTANSAEAH 120 LIPAARRHLF DMLPFMKLAY LTTNHAILEA MEGEKFVHVV DLSGPAANTV QWIALFHAFR 180 ARRGGPPHLR ITAVHDSKEF LANMAGVLAK EAEAFDIPFQ FSAVEGRLDE LDPDALRHVL 240 RVRSGEALAM SVVAQLHRLL AADDAGRRHV PGSSCLTPLQ IIARSSPSSF GELLERELNT 300 RLQLSPGDSS SVVSSLSPQS PAQAQQRPAA AKLGSFLQAV RALSPKIMVV AEPEANHNAA 360 TFLERCLERA SAAHRCAAER ARAERLVLGE EIXGVVAREG AERKERHERL AQWGRRMEAA 420 GMERVGMSYG GMMEARKLLQ SLGWGELYGV VHDARGEAFF FCWHRKPLYS VSAWRPAVCR 480 HSGGRLVGS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MDIFPEDTVS SATSSPASSL YSPSPHPHGY GAWVQELSHN QQGVRLINLL YQCAAEVAAG  60
AFDRANYYLE QITQLASLDA PHTLQRLAAV FADALARKLL NLVPGLSRAL LSTANSAEAH  120
LIPAARRHLF DMLPFMKLAY LTTNHAILEA MEGEKFVHVV DLSGPAANTV QWIALFHAFR  180
ARRGGPPHLR ITAVHDSKEF LANMAGVLAK EAEAFDIPFQ FSAVEGRLDE LDPDALRHVL  240
RVRSGEALAM SVVAQLHRLL AADDAGRRHV PGSSCLTPLQ IIARSSPSSF GELLERELNT  300
RLQLSPGDSS SVVSSLSPQS PAQAQQRPAA AKLGSFLQAV RALSPKIMVV AEPEANHNAA  360
TFLERCLERA SAAHRCAAER ARAERLVLGE EIXGVVAREG AERKERHERL AQWGRRMEAA  420
GMERVGMSYG GMMEARKLLQ SLGWGELYGV VHDARGEAFF FCWHRKPLYS VSAWRPAVCR  480
HSGGRLVGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-25	34	476	7	380	Protein SCARECROW
5b3h_A	9e-25	34	476	6	379	Protein SCARECROW
5b3h_D	9e-25	34	476	6	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005299.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975039	0.0	EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703080.1	0.0	scarecrow-like protein 3
TrEMBL	A0A1E5WCK2	0.0	A0A1E5WCK2_9POAL; Scarecrow-like protein 3
STRING	Pavir.Cb02147.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-90	scarecrow-like 3