PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005286.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 820aa    MW: 91769.1 Da    PI: 4.8417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005286.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.71e-18782071128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                 lp+G++F+P+d++l+  +L++++ +        ++ +ik+vd      +++P+d+p  v+++ +  yfF++r ++y+++  +n +     Wk+ g++++
  Do005286.1  78 LPRGVEFNPSDSDLL-WHLAAEAGNGLaerhPFINGFIKSVDddrgFSHAHPQDIP-GVRQDGRGSYFFHRRFESYSNEGDANIS-----WKKIGTSRS 169
                 699************.5677666554435532223347777545669999******.6778899************998887774.....********* PP

         NAM  92 vlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 ++  +g l g+k+ +v+y   ++++++++t W +h+y++
  Do005286.1 170 IIL-DGPLQGCKEEFVLYadMASDKSSQETGWRLHQYHI 207
                 ***.999***********6546888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-2471225IPR003441NAC domain
PROSITE profilePS5100523.23378225IPR003441NAC domain
PfamPF023657.6E-879207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MATGISSPCS RLDPAPDLDH RPLAGRRRLT VQPPAPARAE SSPPLPDRCE ASVDTGAAAG  60
ASQQFFTVPL CLQSWPGLPR GVEFNPSDSD LLWHLAAEAG NGLAERHPFI NGFIKSVDDD  120
RGFSHAHPQD IPGVRQDGRG SYFFHRRFES YSNEGDANIS WKKIGTSRSI ILDGPLQGCK  180
EEFVLYADMA SDKSSQETGW RLHQYHIRNT VKNEGELVVS KIFFESRNNP CELAEEARAE  240
AEWFHTEWMI VSGETLQDVS APDDSREECT TCFNHRIYTE TDELDHISLK ERHRILLAYN  300
SSCPATVSAR KSVIGVETSR TPSKRNHEGS AYKGDICSML QEISSAPPLV ESNPMDDNNN  360
SRLLGEDDPG FSSISGMSTR TDPSLCEVGC SHDPVEGNEN QVVGTATCGG ENSELVVRKQ  420
GGLVADVKLE PALEGYEIDC SESPQANSIH AEGSVPSLGV KDELNECELP GLCEKISFSS  480
RQRRKRKTTS YSTEKMLEED AYTNDESVAY CSHRRRRKKT ATNSIEKALD EDAPGLLEIL  540
VNRGITAEEI KLYGAEEDNE LIPDSTESSF EDLENVIANL FPKRTSLLKL SVARHEKGEK  600
AIYCLSCLIS LIEQSRYLQF RDCPMEWGWC RDLQSFIFVF RSHNRCLLPI NLCPIFLVEM  660
VERLVLMVAL FILLHRIVLE RPEYGYATYF FEVVQSLPIE WQIRRLVTAM KLSGCGRTAL  720
IENRPLLVGE DLTEGEARVL EEYGWIRNTG LGTMVNYRDR VAHDRWTEKS VTDWRAKIGK  780
LLMSGYAEGQ SITIHGPKKV ADLLEATEDA ETEIKLEDPF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795332.10.0uncharacterized protein LOC112875626 isoform X1
TrEMBLA0A1E5WEI40.0A0A1E5WEI4_9POAL; NAC domain-containing protein 8
STRINGPavir.Ib00786.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-37NAC family protein