PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005226.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 225aa    MW: 23567.1 Da    PI: 8.9814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005226.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2091141155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +g+W+AeIrdp     + +r++lg++ t+eeAa+a++ a+++++g
  Do005226.1  91 TQYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTYATPEEAARAYDDAARRFKG 141
                 58********.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.64E-2091151No hitNo description
SMARTSM003809.3E-3692155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3192150IPR001471AP2/ERF domain
PROSITE profilePS5103224.68492149IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2292150IPR016177DNA-binding domain
PfamPF008471.5E-1392141IPR001471AP2/ERF domain
PRINTSPR003673.9E-1193104IPR001471AP2/ERF domain
PRINTSPR003673.9E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MHGDRGVVAP PGGRSEEEEE RAAAGGGGFL GHSYYSAARS EYDAAVVAAA LTHVVCATEP  60
PTTRPGGEAA SALPPAPRQG GDGAGEQQPR TQYRGVRRRP WGKWAAEIRD PAKAARVWLG  120
TYATPEEAAR AYDDAARRFK GAKARLNFPT APPSQPQLAT TARLMMPTAS SSSSAFAATV  180
AEFPGLRQYA HILQSSGDAD VRTVASPGLP PPVDGHEHDG TGSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2092154568ATERF1
3gcc_A3e-2092154568ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957315.11e-67ethylene-responsive transcription factor 4
TrEMBLA0A1E5V4L21e-158A0A1E5V4L2_9POAL; Uncharacterized protein
STRINGSi030810m5e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-23related to AP2 6l