PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005222.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24121 Da PI: 5.8683 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.2 | 5.4e-07 | 67 | 108 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Do005222.1 67 KVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 108 88******************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.103 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-14 | 60 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-6 | 63 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-8 | 67 | 112 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEHGLANASH GTPSFLFCHG GAAAADSASI ETSSGVLDTS PRGTASVDKK IRKPREDSAS 60 LSSAQSKVRR ERISERMRVL QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS 120 LSPVLYGFGM DSDAYSDHTQ KMEGMIHPEA LAMPTSVMNR APSQAIMDTN TSTSSPSYEI 180 HGDGGTTGIS FPQDNGSYIL QTAGEPRQEL FNQAVFSNHM CSFQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005222.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085581 | 1e-137 | BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds. | |||
GenBank | EU962121 | 1e-137 | EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803717.1 | 1e-142 | transcription factor bHLH137-like | ||||
TrEMBL | A0A1E5V4V0 | 1e-166 | A0A1E5V4V0_9POAL; Transcription factor bHLH137 | ||||
STRING | Pavir.Ba01554.1.p | 1e-138 | (Panicum virgatum) | ||||
STRING | Pavir.J05063.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 7e-34 | bHLH family protein |