PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005109.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 309aa    MW: 34581 Da    PI: 4.8769
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005109.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.84.6e-11150238397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 fqr ws +De+ +L  +     ++g+ p+   +a+   + + ++    +   l  K+++LK+++    ++   g+    sk+hd+  f+lsk++Wg
  Do005109.1 150 FQRTWSTDDEVRILEHMAAHSREHGAPPQP--EALLAVLAGGLDNSCRSlAVLQGKVKNLKRRYGLAARR---GEL--PSKDHDRRLFDLSKSVWG 238
                 9************************76554..67888888888877755156778***********9999...544..5799*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-17150238IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLAMGASLAD DGSLNFKNET AAKISRNITE TYEEASHGSY QPIREEDELT RALVATPPPQ  60
KGQDSEESEE DEDEEEEHRE EKADHVAPRP TTKNPSPPLP NREESETSGD EEEEETDDEA  120
PQSKPAANQE AEGKGANPSS VKDKQPGAPF QRTWSTDDEV RILEHMAAHS REHGAPPQPE  180
ALLAVLAGGL DNSCRSLAVL QGKVKNLKRR YGLAARRGEL PSKDHDRRLF DLSKSVWGAA  240
ANGGGARREA GETCELYPYL AEELRAVKEV HPGLFKREFE MIDDDKARAL DERIKRQRRR  300
QMRVVHRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954058.23e-95uncharacterized protein LOC101755591
TrEMBLA0A1E5VAN91e-104A0A1E5VAN9_9POAL; Uncharacterized protein
STRINGSi017797m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-07DNA-binding storekeeper protein-related transcriptional regulator