PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005076.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-X1
Protein Properties Length: 843aa    MW: 92818.4 Da    PI: 8.3804
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005076.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.96.6e-06264281118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG H+C   CH GpCppC
  Do005076.1 264 CGLHQCPVDCHDGPCPPC 281
                 ****************** PP
2zf-NF-X119.71.8e-06371390119
    zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                 CG+H+C + CH+GpC++ C+
  Do005076.1 371 CGRHRCPERCHRGPCDEtCR 390
                 *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590109161IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.55109162IPR001841Zinc finger, RING-type
SMARTSM004380.008211229IPR000967Zinc finger, NF-X1-type
PfamPF014220.0026212228IPR000967Zinc finger, NF-X1-type
CDDcd060083.13E-9254302No hitNo description
SMARTSM004380.0043264283IPR000967Zinc finger, NF-X1-type
PfamPF014223.4E-4264281IPR000967Zinc finger, NF-X1-type
CDDcd060082.83E-8307347No hitNo description
SMARTSM004380.0092317336IPR000967Zinc finger, NF-X1-type
PfamPF014220.18317335IPR000967Zinc finger, NF-X1-type
CDDcd060083.53E-7361406No hitNo description
SMARTSM004380.0029371391IPR000967Zinc finger, NF-X1-type
PfamPF014227.6E-4371390IPR000967Zinc finger, NF-X1-type
SMARTSM0043894410425IPR000967Zinc finger, NF-X1-type
PfamPF0142214413424IPR000967Zinc finger, NF-X1-type
SMARTSM00438150433451IPR000967Zinc finger, NF-X1-type
PfamPF014220.095433443IPR000967Zinc finger, NF-X1-type
SMARTSM00438100573612IPR000967Zinc finger, NF-X1-type
PfamPF014220.49573583IPR000967Zinc finger, NF-X1-type
SMARTSM004380.87667688IPR000967Zinc finger, NF-X1-type
PfamPF014222.2669681IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MPSSYAAAAA GSSSRKPNRT STAAAATARP PAPSPSLAPA PPAANPSAVS DSDPSSYSSS  60
SGDEADLTAS DSATASVISA YLSVAGEGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSSSCF AILHLPCIQS WAHQSASGAA VPCPTWGCPK CRFAYPKSQT PTSYLCFCSK  180
TVDPAPDPWI LPHSCGDVCG RRLNANLDSG CEHTCLLLCH PGPCPPCPAV VPNARCFCGS  240
HWEPRRCAHQ RYSCGGKCSK HLSCGLHQCP VDCHDGPCPP CAVRGKHKCQ CGETMEEKLC  300
SERVFQCKRE CDGMLDCGKH RCERGCHGGK CGECPLRGRR TCPCGKKDYP KLECDAEAAT  360
CGSNCEKLLG CGRHRCPERC HRGPCDETCR LVIIKACRCG GLKKEVCILC STRRCCAGDC  420
SPCSETCDRK LRCGNHKCLS PCHRYYLNPK IKYTLAYQIN MYNSYCRFLV ELKRIRNHPN  480
ARRNATYLAF AGTSLNAGCH GPISPPNPEF TVKPTKRKME KHIECTPGTP CPPCKEVVLV  540
PCFGQHLGQE RAMPCCKWRP FPCQNLCGNP LLCGNHYCTK SCHVLEVPLN QPEGDPVASV  600
SKENTPAEPC EQCDLPCQRV SYSLFLCKNF SFVCFTKLNM NKLHFCMPLS LVQDIDSNVC  660
FRKLPNCPHL CSEVCHPGTC PSVDRCMKKV NVRCACNTLK QEWICQDVRK EYRNSGRDTK  720
EVPKSQFGVG LLACGEDCKK KVKVADSELH LRKTQESKIP AVEEVANVPK RRKRRDRGQE  780
VNKVSKFQEV KTYVLRMLLI ILTSIIIAAG LYLLWKGIFW LSDWMNEMEE QKARQRHPKG  840
SML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1768774PKRRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005076.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968270.10.0NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1E5WFP80.0A0A1E5WFP8_9POAL; NF-X1-type zinc finger protein NFXL2
STRINGSi000223m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors