PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 531aa MW: 61072.9 Da PI: 9.3496 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.9 | 2.3e-54 | 87 | 215 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++vl+++g Do004998.1 87 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVLHHGG 184 79****************************.99**************85335566888***************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kktLv+y+grap+g++tdWvmheyrl Do004998.1 185 RPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 215 *****************************98 PP | |||||||
2 | NAM | 171.3 | 3.1e-53 | 319 | 446 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v ++ Do004998.1 319 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATQAGYWKSTGKDRRVNY-QN 415 79****************************.99**************84335556888*************************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kktLv+ykgrap+g +t+Wvmheyr+ Do004998.1 416 RPIGMKKTLVYYKGRAPQGLRTNWVMHEYRI 446 9****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-65 | 79 | 238 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.251 | 87 | 238 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-29 | 88 | 215 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-63 | 311 | 469 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.261 | 319 | 469 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-29 | 320 | 446 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MEPVEKRVKL ARARESGKET TKGGHPIAQN RIDRSIDRRC AGVGSRQPPH PASRLIDRSL 60 AGRRQHISVR RRSSAPTVQA SMAPVGLPPG FRFHPTDEEL VNYYLKRKIH GLKIELDIIP 120 EVDLYKCEPW ELADKSFLPS RDPEWYFFGP RDRKYPNGFR TNRATRAGYW KSTGKDRRVL 180 HHGGRPIGMK KTLVYYRGRA PQGVRTDWVM HEYRLDDKDA EDTLPIQDTY ALCRVFKKNA 240 ICTEVDDLQA QCSMALLEGA CQQLLTSGSQ EYQTPSPDAL NHFTEELKST VAGDGRERQR 300 ERSARKEAAS WEAMAPADLP PGFRFHPTDE ELVNYYLKRK VHGLSIELDI IPEVDLYKCE 360 PWELAEKSFL PSRDPEWYFF GPRDRKYPNG CRTNRATQAG YWKSTGKDRR VNYQNRPIGM 420 KKTLVYYKGR APQGLRTNWV MHEYRIEESE CENTMGIQDS YALCRVFKKN VAFGDFQKQK 480 EGECSSSQAK GKQEQFTNVG DAGQSSGSNE HGKDNSWMQF IADDLWCNKT K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 82 | 469 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 82 | 469 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 82 | 469 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 82 | 469 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-51 | 82 | 469 | 10 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 82 | 469 | 10 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004998.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728059 | 0.0 | KJ728059.1 Zea mays clone pUT6205 NAC transcription factor (NAC121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803497.1 | 1e-156 | NAC domain-containing protein 45-like | ||||
Swissprot | A4VCM0 | 2e-82 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A1E5WFF4 | 0.0 | A0A1E5WFF4_9POAL; NAC domain-containing protein 45 | ||||
STRING | OPUNC09G17350.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-104 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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